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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ecc: Escherichia coli CFT073 (UPEC)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ecc00010 Glycolysis / Gluconeogenesis SBML MML
ecc00020 Citrate cycle (TCA cycle) SBML MML
ecc00030 Pentose phosphate pathway SBML MML
ecc00040 Pentose and glucuronate interconversions SBML MML
ecc00051 Fructose and mannose metabolism SBML MML
ecc00052 Galactose metabolism SBML MML
ecc00053 Ascorbate and aldarate metabolism SBML MML
ecc00061 Fatty acid biosynthesis SBML MML
ecc00062 Fatty acid elongation in mitochondria SBML MML
ecc00071 Fatty acid metabolism SBML MML
ecc00100 (Undocumented) SBML MML
ecc00120 (Undocumented) SBML MML
ecc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ecc00150 Androgen and estrogen metabolism SBML MML
ecc00220 (Undocumented) SBML MML
ecc00230 Purine metabolism SBML MML
ecc00240 Pyrimidine metabolism SBML MML
ecc00251 (Undocumented) SBML MML
ecc00252 (Undocumented) SBML MML
ecc00260 Glycine, serine and threonine metabolism SBML MML
ecc00271 (Undocumented) SBML MML
ecc00272 (Undocumented) SBML MML
ecc00280 Valine, leucine and isoleucine degradation SBML MML
ecc00281 Geraniol degradation SBML MML
ecc00290 Valine, leucine and isoleucine biosynthesis SBML MML
ecc00300 Lysine biosynthesis SBML MML
ecc00310 Lysine degradation SBML MML
ecc00330 Arginine and proline metabolism SBML MML
ecc00340 Histidine metabolism SBML MML
ecc00350 Tyrosine metabolism SBML MML
ecc00360 Phenylalanine metabolism SBML MML
ecc00361 gamma-Hexachlorocyclohexane degradation SBML MML
ecc00364 Fluorobenzoate degradation SBML MML
ecc00380 Tryptophan metabolism SBML MML
ecc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ecc00401 Novobiocin biosynthesis SBML MML
ecc00410 beta-Alanine metabolism SBML MML
ecc00430 Taurine and hypotaurine metabolism SBML MML
ecc00450 Selenoamino acid metabolism SBML MML
ecc00460 (Undocumented) SBML MML
ecc00471 D-Glutamine and D-glutamate metabolism SBML MML
ecc00473 D-Alanine metabolism SBML MML
ecc00480 Glutathione metabolism SBML MML
ecc00500 Starch and sucrose metabolism SBML MML
ecc00520 Amino sugar and nucleotide sugar metabolism SBML MML
ecc00521 Streptomycin biosynthesis SBML MML
ecc00523 Polyketide sugar unit biosynthesis SBML MML
ecc00530 (Undocumented) SBML MML
ecc00540 Lipopolysaccharide biosynthesis SBML MML
ecc00550 Peptidoglycan biosynthesis SBML MML
ecc00561 Glycerolipid metabolism SBML MML
ecc00562 Inositol phosphate metabolism SBML MML
ecc00564 Glycerophospholipid metabolism SBML MML
ecc00565 Ether lipid metabolism SBML MML
ecc00590 Arachidonic acid metabolism SBML MML
ecc00591 Linoleic acid metabolism SBML MML
ecc00592 alpha-Linolenic acid metabolism SBML MML
ecc00600 Sphingolipid metabolism SBML MML
ecc00620 Pyruvate metabolism SBML MML
ecc00624 1- and 2-Methylnaphthalene degradation SBML MML
ecc00627 1,4-Dichlorobenzene degradation SBML MML
ecc00630 Glyoxylate and dicarboxylate metabolism SBML MML
ecc00632 (Undocumented) SBML MML
ecc00633 Trinitrotoluene degradation SBML MML
ecc00640 Propanoate metabolism SBML MML
ecc00641 3-Chloroacrylic acid degradation SBML MML
ecc00643 Styrene degradation SBML MML
ecc00650 Butanoate metabolism SBML MML
ecc00660 C5-Branched dibasic acid metabolism SBML MML
ecc00670 One carbon pool by folate SBML MML
ecc00680 Methane metabolism SBML MML
ecc00710 (Undocumented) SBML MML
ecc00720 (Undocumented) SBML MML
ecc00730 Thiamine metabolism SBML MML
ecc00740 Riboflavin metabolism SBML MML
ecc00750 Vitamin B6 metabolism SBML MML
ecc00760 Nicotinate and nicotinamide metabolism SBML MML
ecc00770 Pantothenate and CoA biosynthesis SBML MML
ecc00780 Biotin metabolism SBML MML
ecc00785 Lipoic acid metabolism SBML MML
ecc00790 Folate biosynthesis SBML MML
ecc00791 Atrazine degradation SBML MML
ecc00860 Porphyrin and chlorophyll metabolism SBML MML
ecc00900 Terpenoid backbone biosynthesis SBML MML
ecc00903 (Undocumented) SBML MML
ecc00910 Nitrogen metabolism SBML MML
ecc00920 Sulfur metabolism SBML MML
ecc00930 Caprolactam degradation SBML MML
ecc00950 (Undocumented) SBML MML
ecc00960 (Undocumented) SBML MML
ecc00970 Aminoacyl-tRNA biosynthesis SBML MML
ecc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ecc00982 (Undocumented) SBML MML
ecc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.