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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ecj: Escherichia coli K-12 W3110

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ecj00010 Glycolysis / Gluconeogenesis SBML MML
ecj00020 Citrate cycle (TCA cycle) SBML MML
ecj00030 Pentose phosphate pathway SBML MML
ecj00040 Pentose and glucuronate interconversions SBML MML
ecj00051 Fructose and mannose metabolism SBML MML
ecj00052 Galactose metabolism SBML MML
ecj00053 Ascorbate and aldarate metabolism SBML MML
ecj00061 Fatty acid biosynthesis SBML MML
ecj00062 Fatty acid elongation in mitochondria SBML MML
ecj00071 Fatty acid metabolism SBML MML
ecj00100 (Undocumented) SBML MML
ecj00120 (Undocumented) SBML MML
ecj00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ecj00150 Androgen and estrogen metabolism SBML MML
ecj00220 (Undocumented) SBML MML
ecj00230 Purine metabolism SBML MML
ecj00240 Pyrimidine metabolism SBML MML
ecj00251 (Undocumented) SBML MML
ecj00252 (Undocumented) SBML MML
ecj00260 Glycine, serine and threonine metabolism SBML MML
ecj00271 (Undocumented) SBML MML
ecj00272 (Undocumented) SBML MML
ecj00280 Valine, leucine and isoleucine degradation SBML MML
ecj00281 Geraniol degradation SBML MML
ecj00290 Valine, leucine and isoleucine biosynthesis SBML MML
ecj00300 Lysine biosynthesis SBML MML
ecj00310 Lysine degradation SBML MML
ecj00330 Arginine and proline metabolism SBML MML
ecj00340 Histidine metabolism SBML MML
ecj00350 Tyrosine metabolism SBML MML
ecj00360 Phenylalanine metabolism SBML MML
ecj00361 gamma-Hexachlorocyclohexane degradation SBML MML
ecj00362 (Undocumented) SBML MML
ecj00380 Tryptophan metabolism SBML MML
ecj00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ecj00401 Novobiocin biosynthesis SBML MML
ecj00410 beta-Alanine metabolism SBML MML
ecj00430 Taurine and hypotaurine metabolism SBML MML
ecj00450 Selenoamino acid metabolism SBML MML
ecj00460 (Undocumented) SBML MML
ecj00471 D-Glutamine and D-glutamate metabolism SBML MML
ecj00473 D-Alanine metabolism SBML MML
ecj00480 Glutathione metabolism SBML MML
ecj00500 Starch and sucrose metabolism SBML MML
ecj00520 Amino sugar and nucleotide sugar metabolism SBML MML
ecj00521 Streptomycin biosynthesis SBML MML
ecj00523 Polyketide sugar unit biosynthesis SBML MML
ecj00530 (Undocumented) SBML MML
ecj00540 Lipopolysaccharide biosynthesis SBML MML
ecj00550 Peptidoglycan biosynthesis SBML MML
ecj00561 Glycerolipid metabolism SBML MML
ecj00562 Inositol phosphate metabolism SBML MML
ecj00564 Glycerophospholipid metabolism SBML MML
ecj00590 Arachidonic acid metabolism SBML MML
ecj00592 alpha-Linolenic acid metabolism SBML MML
ecj00600 Sphingolipid metabolism SBML MML
ecj00620 Pyruvate metabolism SBML MML
ecj00621 (Undocumented) SBML MML
ecj00622 Toluene and xylene degradation SBML MML
ecj00624 1- and 2-Methylnaphthalene degradation SBML MML
ecj00626 Naphthalene and anthracene degradation SBML MML
ecj00627 1,4-Dichlorobenzene degradation SBML MML
ecj00628 Fluorene degradation SBML MML
ecj00629 Carbazole degradation SBML MML
ecj00630 Glyoxylate and dicarboxylate metabolism SBML MML
ecj00632 (Undocumented) SBML MML
ecj00633 Trinitrotoluene degradation SBML MML
ecj00640 Propanoate metabolism SBML MML
ecj00641 3-Chloroacrylic acid degradation SBML MML
ecj00642 Ethylbenzene degradation SBML MML
ecj00643 Styrene degradation SBML MML
ecj00650 Butanoate metabolism SBML MML
ecj00660 C5-Branched dibasic acid metabolism SBML MML
ecj00670 One carbon pool by folate SBML MML
ecj00680 Methane metabolism SBML MML
ecj00710 (Undocumented) SBML MML
ecj00720 (Undocumented) SBML MML
ecj00730 Thiamine metabolism SBML MML
ecj00740 Riboflavin metabolism SBML MML
ecj00750 Vitamin B6 metabolism SBML MML
ecj00760 Nicotinate and nicotinamide metabolism SBML MML
ecj00770 Pantothenate and CoA biosynthesis SBML MML
ecj00780 Biotin metabolism SBML MML
ecj00785 Lipoic acid metabolism SBML MML
ecj00790 Folate biosynthesis SBML MML
ecj00791 Atrazine degradation SBML MML
ecj00860 Porphyrin and chlorophyll metabolism SBML MML
ecj00900 Terpenoid backbone biosynthesis SBML MML
ecj00903 (Undocumented) SBML MML
ecj00910 Nitrogen metabolism SBML MML
ecj00920 Sulfur metabolism SBML MML
ecj00930 Caprolactam degradation SBML MML
ecj00940 (Undocumented) SBML MML
ecj00950 (Undocumented) SBML MML
ecj00960 (Undocumented) SBML MML
ecj00970 Aminoacyl-tRNA biosynthesis SBML MML
ecj00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ecj00982 (Undocumented) SBML MML
ecj00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.