This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ecm: Escherichia coli SECEC

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ecm00010 Glycolysis / Gluconeogenesis SBML MML
ecm00020 Citrate cycle (TCA cycle) SBML MML
ecm00030 Pentose phosphate pathway SBML MML
ecm00040 Pentose and glucuronate interconversions SBML MML
ecm00051 Fructose and mannose metabolism SBML MML
ecm00052 Galactose metabolism SBML MML
ecm00053 Ascorbate and aldarate metabolism SBML MML
ecm00061 Fatty acid biosynthesis SBML MML
ecm00071 Fatty acid metabolism SBML MML
ecm00100 (Undocumented) SBML MML
ecm00120 (Undocumented) SBML MML
ecm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ecm00150 Androgen and estrogen metabolism SBML MML
ecm00220 (Undocumented) SBML MML
ecm00230 Purine metabolism SBML MML
ecm00240 Pyrimidine metabolism SBML MML
ecm00251 (Undocumented) SBML MML
ecm00252 (Undocumented) SBML MML
ecm00260 Glycine, serine and threonine metabolism SBML MML
ecm00271 (Undocumented) SBML MML
ecm00272 (Undocumented) SBML MML
ecm00280 Valine, leucine and isoleucine degradation SBML MML
ecm00281 Geraniol degradation SBML MML
ecm00290 Valine, leucine and isoleucine biosynthesis SBML MML
ecm00300 Lysine biosynthesis SBML MML
ecm00310 Lysine degradation SBML MML
ecm00330 Arginine and proline metabolism SBML MML
ecm00340 Histidine metabolism SBML MML
ecm00350 Tyrosine metabolism SBML MML
ecm00360 Phenylalanine metabolism SBML MML
ecm00361 gamma-Hexachlorocyclohexane degradation SBML MML
ecm00362 (Undocumented) SBML MML
ecm00364 Fluorobenzoate degradation SBML MML
ecm00380 Tryptophan metabolism SBML MML
ecm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ecm00401 Novobiocin biosynthesis SBML MML
ecm00410 beta-Alanine metabolism SBML MML
ecm00430 Taurine and hypotaurine metabolism SBML MML
ecm00450 Selenoamino acid metabolism SBML MML
ecm00460 (Undocumented) SBML MML
ecm00471 D-Glutamine and D-glutamate metabolism SBML MML
ecm00473 D-Alanine metabolism SBML MML
ecm00480 Glutathione metabolism SBML MML
ecm00500 Starch and sucrose metabolism SBML MML
ecm00520 Amino sugar and nucleotide sugar metabolism SBML MML
ecm00521 Streptomycin biosynthesis SBML MML
ecm00523 Polyketide sugar unit biosynthesis SBML MML
ecm00530 (Undocumented) SBML MML
ecm00540 Lipopolysaccharide biosynthesis SBML MML
ecm00550 Peptidoglycan biosynthesis SBML MML
ecm00561 Glycerolipid metabolism SBML MML
ecm00562 Inositol phosphate metabolism SBML MML
ecm00564 Glycerophospholipid metabolism SBML MML
ecm00590 Arachidonic acid metabolism SBML MML
ecm00592 alpha-Linolenic acid metabolism SBML MML
ecm00600 Sphingolipid metabolism SBML MML
ecm00620 Pyruvate metabolism SBML MML
ecm00621 (Undocumented) SBML MML
ecm00622 Toluene and xylene degradation SBML MML
ecm00624 1- and 2-Methylnaphthalene degradation SBML MML
ecm00626 Naphthalene and anthracene degradation SBML MML
ecm00627 1,4-Dichlorobenzene degradation SBML MML
ecm00628 Fluorene degradation SBML MML
ecm00629 Carbazole degradation SBML MML
ecm00630 Glyoxylate and dicarboxylate metabolism SBML MML
ecm00632 (Undocumented) SBML MML
ecm00633 Trinitrotoluene degradation SBML MML
ecm00640 Propanoate metabolism SBML MML
ecm00641 3-Chloroacrylic acid degradation SBML MML
ecm00642 Ethylbenzene degradation SBML MML
ecm00643 Styrene degradation SBML MML
ecm00650 Butanoate metabolism SBML MML
ecm00660 C5-Branched dibasic acid metabolism SBML MML
ecm00670 One carbon pool by folate SBML MML
ecm00680 Methane metabolism SBML MML
ecm00710 (Undocumented) SBML MML
ecm00720 (Undocumented) SBML MML
ecm00730 Thiamine metabolism SBML MML
ecm00740 Riboflavin metabolism SBML MML
ecm00750 Vitamin B6 metabolism SBML MML
ecm00760 Nicotinate and nicotinamide metabolism SBML MML
ecm00770 Pantothenate and CoA biosynthesis SBML MML
ecm00780 Biotin metabolism SBML MML
ecm00785 Lipoic acid metabolism SBML MML
ecm00790 Folate biosynthesis SBML MML
ecm00791 Atrazine degradation SBML MML
ecm00860 Porphyrin and chlorophyll metabolism SBML MML
ecm00900 Terpenoid backbone biosynthesis SBML MML
ecm00903 (Undocumented) SBML MML
ecm00910 Nitrogen metabolism SBML MML
ecm00920 Sulfur metabolism SBML MML
ecm00930 Caprolactam degradation SBML MML
ecm00940 (Undocumented) SBML MML
ecm00950 (Undocumented) SBML MML
ecm00960 (Undocumented) SBML MML
ecm00970 Aminoacyl-tRNA biosynthesis SBML MML
ecm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ecm00982 (Undocumented) SBML MML
ecm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.