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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism enta: Nicotiana tabacum (tobacco) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
enta00010 Glycolysis / Gluconeogenesis SBML MML
enta00020 Citrate cycle (TCA cycle) SBML MML
enta00030 Pentose phosphate pathway SBML MML
enta00031 (Undocumented) SBML MML
enta00040 Pentose and glucuronate interconversions SBML MML
enta00051 Fructose and mannose metabolism SBML MML
enta00052 Galactose metabolism SBML MML
enta00053 Ascorbate and aldarate metabolism SBML MML
enta00061 Fatty acid biosynthesis SBML MML
enta00062 Fatty acid elongation in mitochondria SBML MML
enta00071 Fatty acid metabolism SBML MML
enta00072 Synthesis and degradation of ketone bodies SBML MML
enta00100 (Undocumented) SBML MML
enta00120 (Undocumented) SBML MML
enta00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
enta00140 (Undocumented) SBML MML
enta00150 Androgen and estrogen metabolism SBML MML
enta00220 (Undocumented) SBML MML
enta00230 Purine metabolism SBML MML
enta00232 Caffeine metabolism SBML MML
enta00240 Pyrimidine metabolism SBML MML
enta00251 (Undocumented) SBML MML
enta00252 (Undocumented) SBML MML
enta00260 Glycine, serine and threonine metabolism SBML MML
enta00271 (Undocumented) SBML MML
enta00272 (Undocumented) SBML MML
enta00280 Valine, leucine and isoleucine degradation SBML MML
enta00281 Geraniol degradation SBML MML
enta00290 Valine, leucine and isoleucine biosynthesis SBML MML
enta00300 Lysine biosynthesis SBML MML
enta00310 Lysine degradation SBML MML
enta00330 Arginine and proline metabolism SBML MML
enta00340 Histidine metabolism SBML MML
enta00350 Tyrosine metabolism SBML MML
enta00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
enta00360 Phenylalanine metabolism SBML MML
enta00361 gamma-Hexachlorocyclohexane degradation SBML MML
enta00362 (Undocumented) SBML MML
enta00363 Bisphenol A degradation SBML MML
enta00380 Tryptophan metabolism SBML MML
enta00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
enta00410 beta-Alanine metabolism SBML MML
enta00430 Taurine and hypotaurine metabolism SBML MML
enta00440 Phosphonate and phosphinate metabolism SBML MML
enta00450 Selenoamino acid metabolism SBML MML
enta00460 (Undocumented) SBML MML
enta00471 D-Glutamine and D-glutamate metabolism SBML MML
enta00472 D-Arginine and D-ornithine metabolism SBML MML
enta00480 Glutathione metabolism SBML MML
enta00500 Starch and sucrose metabolism SBML MML
enta00510 (Undocumented) SBML MML
enta00520 Amino sugar and nucleotide sugar metabolism SBML MML
enta00521 Streptomycin biosynthesis SBML MML
enta00523 Polyketide sugar unit biosynthesis SBML MML
enta00530 (Undocumented) SBML MML
enta00540 Lipopolysaccharide biosynthesis SBML MML
enta00550 Peptidoglycan biosynthesis SBML MML
enta00561 Glycerolipid metabolism SBML MML
enta00562 Inositol phosphate metabolism SBML MML
enta00564 Glycerophospholipid metabolism SBML MML
enta00565 Ether lipid metabolism SBML MML
enta00590 Arachidonic acid metabolism SBML MML
enta00591 Linoleic acid metabolism SBML MML
enta00592 alpha-Linolenic acid metabolism SBML MML
enta00600 Sphingolipid metabolism SBML MML
enta00620 Pyruvate metabolism SBML MML
enta00624 1- and 2-Methylnaphthalene degradation SBML MML
enta00625 (Undocumented) SBML MML
enta00626 Naphthalene and anthracene degradation SBML MML
enta00630 Glyoxylate and dicarboxylate metabolism SBML MML
enta00631 1,2-Dichloroethane degradation SBML MML
enta00632 (Undocumented) SBML MML
enta00640 Propanoate metabolism SBML MML
enta00641 3-Chloroacrylic acid degradation SBML MML
enta00642 Ethylbenzene degradation SBML MML
enta00643 Styrene degradation SBML MML
enta00650 Butanoate metabolism SBML MML
enta00660 C5-Branched dibasic acid metabolism SBML MML
enta00670 One carbon pool by folate SBML MML
enta00680 Methane metabolism SBML MML
enta00710 (Undocumented) SBML MML
enta00720 (Undocumented) SBML MML
enta00730 Thiamine metabolism SBML MML
enta00740 Riboflavin metabolism SBML MML
enta00750 Vitamin B6 metabolism SBML MML
enta00760 Nicotinate and nicotinamide metabolism SBML MML
enta00770 Pantothenate and CoA biosynthesis SBML MML
enta00780 Biotin metabolism SBML MML
enta00790 Folate biosynthesis SBML MML
enta00791 Atrazine degradation SBML MML
enta00860 Porphyrin and chlorophyll metabolism SBML MML
enta00900 Terpenoid backbone biosynthesis SBML MML
enta00903 (Undocumented) SBML MML
enta00904 (Undocumented) SBML MML
enta00906 Carotenoid biosynthesis SBML MML
enta00908 (Undocumented) SBML MML
enta00910 Nitrogen metabolism SBML MML
enta00920 Sulfur metabolism SBML MML
enta00930 Caprolactam degradation SBML MML
enta00940 (Undocumented) SBML MML
enta00941 (Undocumented) SBML MML
enta00944 (Undocumented) SBML MML
enta00950 (Undocumented) SBML MML
enta00960 (Undocumented) SBML MML
enta00970 Aminoacyl-tRNA biosynthesis SBML MML
enta00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
enta00982 (Undocumented) SBML MML
enta00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.