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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism esof: Saccharum officinarum (sugarcane) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
esof00010 Glycolysis / Gluconeogenesis SBML MML
esof00020 Citrate cycle (TCA cycle) SBML MML
esof00030 Pentose phosphate pathway SBML MML
esof00031 (Undocumented) SBML MML
esof00040 Pentose and glucuronate interconversions SBML MML
esof00051 Fructose and mannose metabolism SBML MML
esof00052 Galactose metabolism SBML MML
esof00053 Ascorbate and aldarate metabolism SBML MML
esof00061 Fatty acid biosynthesis SBML MML
esof00062 Fatty acid elongation in mitochondria SBML MML
esof00071 Fatty acid metabolism SBML MML
esof00072 Synthesis and degradation of ketone bodies SBML MML
esof00100 (Undocumented) SBML MML
esof00120 (Undocumented) SBML MML
esof00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
esof00140 (Undocumented) SBML MML
esof00150 Androgen and estrogen metabolism SBML MML
esof00220 (Undocumented) SBML MML
esof00230 Purine metabolism SBML MML
esof00232 Caffeine metabolism SBML MML
esof00240 Pyrimidine metabolism SBML MML
esof00251 (Undocumented) SBML MML
esof00252 (Undocumented) SBML MML
esof00260 Glycine, serine and threonine metabolism SBML MML
esof00271 (Undocumented) SBML MML
esof00272 (Undocumented) SBML MML
esof00280 Valine, leucine and isoleucine degradation SBML MML
esof00281 Geraniol degradation SBML MML
esof00290 Valine, leucine and isoleucine biosynthesis SBML MML
esof00300 Lysine biosynthesis SBML MML
esof00310 Lysine degradation SBML MML
esof00311 Penicillin and cephalosporin biosynthesis SBML MML
esof00330 Arginine and proline metabolism SBML MML
esof00340 Histidine metabolism SBML MML
esof00350 Tyrosine metabolism SBML MML
esof00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
esof00360 Phenylalanine metabolism SBML MML
esof00361 gamma-Hexachlorocyclohexane degradation SBML MML
esof00362 (Undocumented) SBML MML
esof00363 Bisphenol A degradation SBML MML
esof00380 Tryptophan metabolism SBML MML
esof00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
esof00401 Novobiocin biosynthesis SBML MML
esof00410 beta-Alanine metabolism SBML MML
esof00430 Taurine and hypotaurine metabolism SBML MML
esof00440 Phosphonate and phosphinate metabolism SBML MML
esof00450 Selenoamino acid metabolism SBML MML
esof00460 (Undocumented) SBML MML
esof00471 D-Glutamine and D-glutamate metabolism SBML MML
esof00472 D-Arginine and D-ornithine metabolism SBML MML
esof00480 Glutathione metabolism SBML MML
esof00500 Starch and sucrose metabolism SBML MML
esof00510 (Undocumented) SBML MML
esof00520 Amino sugar and nucleotide sugar metabolism SBML MML
esof00521 Streptomycin biosynthesis SBML MML
esof00523 Polyketide sugar unit biosynthesis SBML MML
esof00530 (Undocumented) SBML MML
esof00540 Lipopolysaccharide biosynthesis SBML MML
esof00550 Peptidoglycan biosynthesis SBML MML
esof00561 Glycerolipid metabolism SBML MML
esof00562 Inositol phosphate metabolism SBML MML
esof00564 Glycerophospholipid metabolism SBML MML
esof00565 Ether lipid metabolism SBML MML
esof00590 Arachidonic acid metabolism SBML MML
esof00591 Linoleic acid metabolism SBML MML
esof00592 alpha-Linolenic acid metabolism SBML MML
esof00600 Sphingolipid metabolism SBML MML
esof00620 Pyruvate metabolism SBML MML
esof00622 Toluene and xylene degradation SBML MML
esof00623 2,4-Dichlorobenzoate degradation SBML MML
esof00624 1- and 2-Methylnaphthalene degradation SBML MML
esof00625 (Undocumented) SBML MML
esof00626 Naphthalene and anthracene degradation SBML MML
esof00628 Fluorene degradation SBML MML
esof00630 Glyoxylate and dicarboxylate metabolism SBML MML
esof00631 1,2-Dichloroethane degradation SBML MML
esof00632 (Undocumented) SBML MML
esof00640 Propanoate metabolism SBML MML
esof00641 3-Chloroacrylic acid degradation SBML MML
esof00642 Ethylbenzene degradation SBML MML
esof00643 Styrene degradation SBML MML
esof00650 Butanoate metabolism SBML MML
esof00660 C5-Branched dibasic acid metabolism SBML MML
esof00670 One carbon pool by folate SBML MML
esof00680 Methane metabolism SBML MML
esof00710 (Undocumented) SBML MML
esof00720 (Undocumented) SBML MML
esof00730 Thiamine metabolism SBML MML
esof00740 Riboflavin metabolism SBML MML
esof00750 Vitamin B6 metabolism SBML MML
esof00760 Nicotinate and nicotinamide metabolism SBML MML
esof00770 Pantothenate and CoA biosynthesis SBML MML
esof00780 Biotin metabolism SBML MML
esof00790 Folate biosynthesis SBML MML
esof00791 Atrazine degradation SBML MML
esof00860 Porphyrin and chlorophyll metabolism SBML MML
esof00900 Terpenoid backbone biosynthesis SBML MML
esof00901 (Undocumented) SBML MML
esof00902 Monoterpenoid biosynthesis SBML MML
esof00903 (Undocumented) SBML MML
esof00904 (Undocumented) SBML MML
esof00906 Carotenoid biosynthesis SBML MML
esof00908 (Undocumented) SBML MML
esof00910 Nitrogen metabolism SBML MML
esof00920 Sulfur metabolism SBML MML
esof00930 Caprolactam degradation SBML MML
esof00940 (Undocumented) SBML MML
esof00941 (Undocumented) SBML MML
esof00944 (Undocumented) SBML MML
esof00950 (Undocumented) SBML MML
esof00960 (Undocumented) SBML MML
esof00970 Aminoacyl-tRNA biosynthesis SBML MML
esof00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
esof00982 (Undocumented) SBML MML
esof00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.