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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism espp: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
espp00010 Glycolysis / Gluconeogenesis SBML MML
espp00020 Citrate cycle (TCA cycle) SBML MML
espp00030 Pentose phosphate pathway SBML MML
espp00031 (Undocumented) SBML MML
espp00040 Pentose and glucuronate interconversions SBML MML
espp00051 Fructose and mannose metabolism SBML MML
espp00052 Galactose metabolism SBML MML
espp00053 Ascorbate and aldarate metabolism SBML MML
espp00061 Fatty acid biosynthesis SBML MML
espp00071 Fatty acid metabolism SBML MML
espp00072 Synthesis and degradation of ketone bodies SBML MML
espp00100 (Undocumented) SBML MML
espp00120 (Undocumented) SBML MML
espp00140 (Undocumented) SBML MML
espp00150 Androgen and estrogen metabolism SBML MML
espp00220 (Undocumented) SBML MML
espp00230 Purine metabolism SBML MML
espp00240 Pyrimidine metabolism SBML MML
espp00251 (Undocumented) SBML MML
espp00252 (Undocumented) SBML MML
espp00260 Glycine, serine and threonine metabolism SBML MML
espp00271 (Undocumented) SBML MML
espp00272 (Undocumented) SBML MML
espp00280 Valine, leucine and isoleucine degradation SBML MML
espp00281 Geraniol degradation SBML MML
espp00290 Valine, leucine and isoleucine biosynthesis SBML MML
espp00300 Lysine biosynthesis SBML MML
espp00310 Lysine degradation SBML MML
espp00330 Arginine and proline metabolism SBML MML
espp00340 Histidine metabolism SBML MML
espp00350 Tyrosine metabolism SBML MML
espp00360 Phenylalanine metabolism SBML MML
espp00361 gamma-Hexachlorocyclohexane degradation SBML MML
espp00362 (Undocumented) SBML MML
espp00363 Bisphenol A degradation SBML MML
espp00380 Tryptophan metabolism SBML MML
espp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
espp00401 Novobiocin biosynthesis SBML MML
espp00410 beta-Alanine metabolism SBML MML
espp00430 Taurine and hypotaurine metabolism SBML MML
espp00440 Phosphonate and phosphinate metabolism SBML MML
espp00450 Selenoamino acid metabolism SBML MML
espp00460 (Undocumented) SBML MML
espp00471 D-Glutamine and D-glutamate metabolism SBML MML
espp00480 Glutathione metabolism SBML MML
espp00500 Starch and sucrose metabolism SBML MML
espp00510 (Undocumented) SBML MML
espp00520 Amino sugar and nucleotide sugar metabolism SBML MML
espp00521 Streptomycin biosynthesis SBML MML
espp00530 (Undocumented) SBML MML
espp00540 Lipopolysaccharide biosynthesis SBML MML
espp00550 Peptidoglycan biosynthesis SBML MML
espp00561 Glycerolipid metabolism SBML MML
espp00562 Inositol phosphate metabolism SBML MML
espp00564 Glycerophospholipid metabolism SBML MML
espp00565 Ether lipid metabolism SBML MML
espp00590 Arachidonic acid metabolism SBML MML
espp00591 Linoleic acid metabolism SBML MML
espp00592 alpha-Linolenic acid metabolism SBML MML
espp00600 Sphingolipid metabolism SBML MML
espp00620 Pyruvate metabolism SBML MML
espp00624 1- and 2-Methylnaphthalene degradation SBML MML
espp00625 (Undocumented) SBML MML
espp00626 Naphthalene and anthracene degradation SBML MML
espp00630 Glyoxylate and dicarboxylate metabolism SBML MML
espp00632 (Undocumented) SBML MML
espp00640 Propanoate metabolism SBML MML
espp00641 3-Chloroacrylic acid degradation SBML MML
espp00643 Styrene degradation SBML MML
espp00650 Butanoate metabolism SBML MML
espp00660 C5-Branched dibasic acid metabolism SBML MML
espp00670 One carbon pool by folate SBML MML
espp00680 Methane metabolism SBML MML
espp00710 (Undocumented) SBML MML
espp00720 (Undocumented) SBML MML
espp00730 Thiamine metabolism SBML MML
espp00740 Riboflavin metabolism SBML MML
espp00750 Vitamin B6 metabolism SBML MML
espp00760 Nicotinate and nicotinamide metabolism SBML MML
espp00770 Pantothenate and CoA biosynthesis SBML MML
espp00790 Folate biosynthesis SBML MML
espp00860 Porphyrin and chlorophyll metabolism SBML MML
espp00900 Terpenoid backbone biosynthesis SBML MML
espp00903 (Undocumented) SBML MML
espp00904 (Undocumented) SBML MML
espp00906 Carotenoid biosynthesis SBML MML
espp00910 Nitrogen metabolism SBML MML
espp00920 Sulfur metabolism SBML MML
espp00930 Caprolactam degradation SBML MML
espp00940 (Undocumented) SBML MML
espp00941 (Undocumented) SBML MML
espp00944 (Undocumented) SBML MML
espp00950 (Undocumented) SBML MML
espp00960 (Undocumented) SBML MML
espp00970 Aminoacyl-tRNA biosynthesis SBML MML
espp00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
espp00982 (Undocumented) SBML MML
espp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.