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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism espu: Strongylocentrotus purpuratus (purple sea urchin) (EST)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
espu00010 Glycolysis / Gluconeogenesis SBML MML
espu00020 Citrate cycle (TCA cycle) SBML MML
espu00030 Pentose phosphate pathway SBML MML
espu00031 (Undocumented) SBML MML
espu00040 Pentose and glucuronate interconversions SBML MML
espu00051 Fructose and mannose metabolism SBML MML
espu00052 Galactose metabolism SBML MML
espu00053 Ascorbate and aldarate metabolism SBML MML
espu00061 Fatty acid biosynthesis SBML MML
espu00062 Fatty acid elongation in mitochondria SBML MML
espu00071 Fatty acid metabolism SBML MML
espu00072 Synthesis and degradation of ketone bodies SBML MML
espu00100 (Undocumented) SBML MML
espu00120 (Undocumented) SBML MML
espu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
espu00140 (Undocumented) SBML MML
espu00150 Androgen and estrogen metabolism SBML MML
espu00220 (Undocumented) SBML MML
espu00230 Purine metabolism SBML MML
espu00240 Pyrimidine metabolism SBML MML
espu00251 (Undocumented) SBML MML
espu00252 (Undocumented) SBML MML
espu00260 Glycine, serine and threonine metabolism SBML MML
espu00271 (Undocumented) SBML MML
espu00272 (Undocumented) SBML MML
espu00280 Valine, leucine and isoleucine degradation SBML MML
espu00281 Geraniol degradation SBML MML
espu00290 Valine, leucine and isoleucine biosynthesis SBML MML
espu00300 Lysine biosynthesis SBML MML
espu00310 Lysine degradation SBML MML
espu00330 Arginine and proline metabolism SBML MML
espu00340 Histidine metabolism SBML MML
espu00350 Tyrosine metabolism SBML MML
espu00360 Phenylalanine metabolism SBML MML
espu00361 gamma-Hexachlorocyclohexane degradation SBML MML
espu00363 Bisphenol A degradation SBML MML
espu00380 Tryptophan metabolism SBML MML
espu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
espu00410 beta-Alanine metabolism SBML MML
espu00430 Taurine and hypotaurine metabolism SBML MML
espu00450 Selenoamino acid metabolism SBML MML
espu00460 (Undocumented) SBML MML
espu00471 D-Glutamine and D-glutamate metabolism SBML MML
espu00472 D-Arginine and D-ornithine metabolism SBML MML
espu00480 Glutathione metabolism SBML MML
espu00500 Starch and sucrose metabolism SBML MML
espu00510 (Undocumented) SBML MML
espu00520 Amino sugar and nucleotide sugar metabolism SBML MML
espu00521 Streptomycin biosynthesis SBML MML
espu00530 (Undocumented) SBML MML
espu00550 Peptidoglycan biosynthesis SBML MML
espu00561 Glycerolipid metabolism SBML MML
espu00562 Inositol phosphate metabolism SBML MML
espu00564 Glycerophospholipid metabolism SBML MML
espu00565 Ether lipid metabolism SBML MML
espu00590 Arachidonic acid metabolism SBML MML
espu00591 Linoleic acid metabolism SBML MML
espu00592 alpha-Linolenic acid metabolism SBML MML
espu00600 Sphingolipid metabolism SBML MML
espu00620 Pyruvate metabolism SBML MML
espu00624 1- and 2-Methylnaphthalene degradation SBML MML
espu00626 Naphthalene and anthracene degradation SBML MML
espu00630 Glyoxylate and dicarboxylate metabolism SBML MML
espu00631 1,2-Dichloroethane degradation SBML MML
espu00632 (Undocumented) SBML MML
espu00640 Propanoate metabolism SBML MML
espu00641 3-Chloroacrylic acid degradation SBML MML
espu00642 Ethylbenzene degradation SBML MML
espu00643 Styrene degradation SBML MML
espu00650 Butanoate metabolism SBML MML
espu00660 C5-Branched dibasic acid metabolism SBML MML
espu00670 One carbon pool by folate SBML MML
espu00680 Methane metabolism SBML MML
espu00710 (Undocumented) SBML MML
espu00720 (Undocumented) SBML MML
espu00730 Thiamine metabolism SBML MML
espu00740 Riboflavin metabolism SBML MML
espu00750 Vitamin B6 metabolism SBML MML
espu00760 Nicotinate and nicotinamide metabolism SBML MML
espu00770 Pantothenate and CoA biosynthesis SBML MML
espu00780 Biotin metabolism SBML MML
espu00790 Folate biosynthesis SBML MML
espu00791 Atrazine degradation SBML MML
espu00860 Porphyrin and chlorophyll metabolism SBML MML
espu00903 (Undocumented) SBML MML
espu00910 Nitrogen metabolism SBML MML
espu00920 Sulfur metabolism SBML MML
espu00930 Caprolactam degradation SBML MML
espu00940 (Undocumented) SBML MML
espu00941 (Undocumented) SBML MML
espu00950 (Undocumented) SBML MML
espu00960 (Undocumented) SBML MML
espu00970 Aminoacyl-tRNA biosynthesis SBML MML
espu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
espu00982 (Undocumented) SBML MML
espu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.