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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism fjo: Flavobacterium johnsoniae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
fjo00010 Glycolysis / Gluconeogenesis SBML MML
fjo00020 Citrate cycle (TCA cycle) SBML MML
fjo00030 Pentose phosphate pathway SBML MML
fjo00040 Pentose and glucuronate interconversions SBML MML
fjo00051 Fructose and mannose metabolism SBML MML
fjo00052 Galactose metabolism SBML MML
fjo00053 Ascorbate and aldarate metabolism SBML MML
fjo00061 Fatty acid biosynthesis SBML MML
fjo00062 Fatty acid elongation in mitochondria SBML MML
fjo00071 Fatty acid metabolism SBML MML
fjo00072 Synthesis and degradation of ketone bodies SBML MML
fjo00100 (Undocumented) SBML MML
fjo00120 (Undocumented) SBML MML
fjo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
fjo00150 Androgen and estrogen metabolism SBML MML
fjo00220 (Undocumented) SBML MML
fjo00230 Purine metabolism SBML MML
fjo00240 Pyrimidine metabolism SBML MML
fjo00251 (Undocumented) SBML MML
fjo00252 (Undocumented) SBML MML
fjo00260 Glycine, serine and threonine metabolism SBML MML
fjo00271 (Undocumented) SBML MML
fjo00272 (Undocumented) SBML MML
fjo00280 Valine, leucine and isoleucine degradation SBML MML
fjo00281 Geraniol degradation SBML MML
fjo00290 Valine, leucine and isoleucine biosynthesis SBML MML
fjo00300 Lysine biosynthesis SBML MML
fjo00310 Lysine degradation SBML MML
fjo00311 Penicillin and cephalosporin biosynthesis SBML MML
fjo00330 Arginine and proline metabolism SBML MML
fjo00340 Histidine metabolism SBML MML
fjo00350 Tyrosine metabolism SBML MML
fjo00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
fjo00360 Phenylalanine metabolism SBML MML
fjo00361 gamma-Hexachlorocyclohexane degradation SBML MML
fjo00362 (Undocumented) SBML MML
fjo00364 Fluorobenzoate degradation SBML MML
fjo00380 Tryptophan metabolism SBML MML
fjo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
fjo00401 Novobiocin biosynthesis SBML MML
fjo00410 beta-Alanine metabolism SBML MML
fjo00430 Taurine and hypotaurine metabolism SBML MML
fjo00450 Selenoamino acid metabolism SBML MML
fjo00460 (Undocumented) SBML MML
fjo00471 D-Glutamine and D-glutamate metabolism SBML MML
fjo00473 D-Alanine metabolism SBML MML
fjo00480 Glutathione metabolism SBML MML
fjo00500 Starch and sucrose metabolism SBML MML
fjo00510 (Undocumented) SBML MML
fjo00520 Amino sugar and nucleotide sugar metabolism SBML MML
fjo00521 Streptomycin biosynthesis SBML MML
fjo00523 Polyketide sugar unit biosynthesis SBML MML
fjo00530 (Undocumented) SBML MML
fjo00540 Lipopolysaccharide biosynthesis SBML MML
fjo00550 Peptidoglycan biosynthesis SBML MML
fjo00561 Glycerolipid metabolism SBML MML
fjo00562 Inositol phosphate metabolism SBML MML
fjo00564 Glycerophospholipid metabolism SBML MML
fjo00590 Arachidonic acid metabolism SBML MML
fjo00592 alpha-Linolenic acid metabolism SBML MML
fjo00600 Sphingolipid metabolism SBML MML
fjo00620 Pyruvate metabolism SBML MML
fjo00624 1- and 2-Methylnaphthalene degradation SBML MML
fjo00626 Naphthalene and anthracene degradation SBML MML
fjo00627 1,4-Dichlorobenzene degradation SBML MML
fjo00628 Fluorene degradation SBML MML
fjo00630 Glyoxylate and dicarboxylate metabolism SBML MML
fjo00632 (Undocumented) SBML MML
fjo00640 Propanoate metabolism SBML MML
fjo00641 3-Chloroacrylic acid degradation SBML MML
fjo00642 Ethylbenzene degradation SBML MML
fjo00643 Styrene degradation SBML MML
fjo00650 Butanoate metabolism SBML MML
fjo00660 C5-Branched dibasic acid metabolism SBML MML
fjo00670 One carbon pool by folate SBML MML
fjo00680 Methane metabolism SBML MML
fjo00710 (Undocumented) SBML MML
fjo00720 (Undocumented) SBML MML
fjo00730 Thiamine metabolism SBML MML
fjo00740 Riboflavin metabolism SBML MML
fjo00750 Vitamin B6 metabolism SBML MML
fjo00760 Nicotinate and nicotinamide metabolism SBML MML
fjo00770 Pantothenate and CoA biosynthesis SBML MML
fjo00780 Biotin metabolism SBML MML
fjo00785 Lipoic acid metabolism SBML MML
fjo00790 Folate biosynthesis SBML MML
fjo00860 Porphyrin and chlorophyll metabolism SBML MML
fjo00900 Terpenoid backbone biosynthesis SBML MML
fjo00903 (Undocumented) SBML MML
fjo00910 Nitrogen metabolism SBML MML
fjo00920 Sulfur metabolism SBML MML
fjo00930 Caprolactam degradation SBML MML
fjo00940 (Undocumented) SBML MML
fjo00941 (Undocumented) SBML MML
fjo00950 (Undocumented) SBML MML
fjo00960 (Undocumented) SBML MML
fjo00970 Aminoacyl-tRNA biosynthesis SBML MML
fjo00982 (Undocumented) SBML MML
fjo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.