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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism fnu: Fusobacterium nucleatum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
fnu00010 Glycolysis / Gluconeogenesis SBML MML
fnu00020 Citrate cycle (TCA cycle) SBML MML
fnu00030 Pentose phosphate pathway SBML MML
fnu00040 Pentose and glucuronate interconversions SBML MML
fnu00051 Fructose and mannose metabolism SBML MML
fnu00052 Galactose metabolism SBML MML
fnu00061 Fatty acid biosynthesis SBML MML
fnu00071 Fatty acid metabolism SBML MML
fnu00100 (Undocumented) SBML MML
fnu00120 (Undocumented) SBML MML
fnu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
fnu00220 (Undocumented) SBML MML
fnu00230 Purine metabolism SBML MML
fnu00240 Pyrimidine metabolism SBML MML
fnu00251 (Undocumented) SBML MML
fnu00252 (Undocumented) SBML MML
fnu00260 Glycine, serine and threonine metabolism SBML MML
fnu00271 (Undocumented) SBML MML
fnu00272 (Undocumented) SBML MML
fnu00280 Valine, leucine and isoleucine degradation SBML MML
fnu00281 Geraniol degradation SBML MML
fnu00290 Valine, leucine and isoleucine biosynthesis SBML MML
fnu00300 Lysine biosynthesis SBML MML
fnu00310 Lysine degradation SBML MML
fnu00330 Arginine and proline metabolism SBML MML
fnu00340 Histidine metabolism SBML MML
fnu00350 Tyrosine metabolism SBML MML
fnu00360 Phenylalanine metabolism SBML MML
fnu00362 (Undocumented) SBML MML
fnu00380 Tryptophan metabolism SBML MML
fnu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
fnu00401 Novobiocin biosynthesis SBML MML
fnu00410 beta-Alanine metabolism SBML MML
fnu00430 Taurine and hypotaurine metabolism SBML MML
fnu00440 Phosphonate and phosphinate metabolism SBML MML
fnu00450 Selenoamino acid metabolism SBML MML
fnu00460 (Undocumented) SBML MML
fnu00471 D-Glutamine and D-glutamate metabolism SBML MML
fnu00473 D-Alanine metabolism SBML MML
fnu00480 Glutathione metabolism SBML MML
fnu00500 Starch and sucrose metabolism SBML MML
fnu00520 Amino sugar and nucleotide sugar metabolism SBML MML
fnu00521 Streptomycin biosynthesis SBML MML
fnu00523 Polyketide sugar unit biosynthesis SBML MML
fnu00530 (Undocumented) SBML MML
fnu00540 Lipopolysaccharide biosynthesis SBML MML
fnu00550 Peptidoglycan biosynthesis SBML MML
fnu00561 Glycerolipid metabolism SBML MML
fnu00564 Glycerophospholipid metabolism SBML MML
fnu00590 Arachidonic acid metabolism SBML MML
fnu00620 Pyruvate metabolism SBML MML
fnu00624 1- and 2-Methylnaphthalene degradation SBML MML
fnu00625 (Undocumented) SBML MML
fnu00630 Glyoxylate and dicarboxylate metabolism SBML MML
fnu00632 (Undocumented) SBML MML
fnu00640 Propanoate metabolism SBML MML
fnu00643 Styrene degradation SBML MML
fnu00650 Butanoate metabolism SBML MML
fnu00670 One carbon pool by folate SBML MML
fnu00710 (Undocumented) SBML MML
fnu00730 Thiamine metabolism SBML MML
fnu00740 Riboflavin metabolism SBML MML
fnu00750 Vitamin B6 metabolism SBML MML
fnu00760 Nicotinate and nicotinamide metabolism SBML MML
fnu00770 Pantothenate and CoA biosynthesis SBML MML
fnu00780 Biotin metabolism SBML MML
fnu00790 Folate biosynthesis SBML MML
fnu00860 Porphyrin and chlorophyll metabolism SBML MML
fnu00900 Terpenoid backbone biosynthesis SBML MML
fnu00903 (Undocumented) SBML MML
fnu00910 Nitrogen metabolism SBML MML
fnu00920 Sulfur metabolism SBML MML
fnu00930 Caprolactam degradation SBML MML
fnu00940 (Undocumented) SBML MML
fnu00960 (Undocumented) SBML MML
fnu00970 Aminoacyl-tRNA biosynthesis SBML MML
fnu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.