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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism fra: Frankia sp. CcI3

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
fra00010 Glycolysis / Gluconeogenesis SBML MML
fra00020 Citrate cycle (TCA cycle) SBML MML
fra00030 Pentose phosphate pathway SBML MML
fra00031 (Undocumented) SBML MML
fra00040 Pentose and glucuronate interconversions SBML MML
fra00051 Fructose and mannose metabolism SBML MML
fra00052 Galactose metabolism SBML MML
fra00053 Ascorbate and aldarate metabolism SBML MML
fra00061 Fatty acid biosynthesis SBML MML
fra00062 Fatty acid elongation in mitochondria SBML MML
fra00071 Fatty acid metabolism SBML MML
fra00072 Synthesis and degradation of ketone bodies SBML MML
fra00100 (Undocumented) SBML MML
fra00120 (Undocumented) SBML MML
fra00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
fra00220 (Undocumented) SBML MML
fra00230 Purine metabolism SBML MML
fra00240 Pyrimidine metabolism SBML MML
fra00251 (Undocumented) SBML MML
fra00252 (Undocumented) SBML MML
fra00260 Glycine, serine and threonine metabolism SBML MML
fra00271 (Undocumented) SBML MML
fra00272 (Undocumented) SBML MML
fra00280 Valine, leucine and isoleucine degradation SBML MML
fra00281 Geraniol degradation SBML MML
fra00290 Valine, leucine and isoleucine biosynthesis SBML MML
fra00300 Lysine biosynthesis SBML MML
fra00310 Lysine degradation SBML MML
fra00330 Arginine and proline metabolism SBML MML
fra00340 Histidine metabolism SBML MML
fra00350 Tyrosine metabolism SBML MML
fra00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
fra00360 Phenylalanine metabolism SBML MML
fra00361 gamma-Hexachlorocyclohexane degradation SBML MML
fra00362 (Undocumented) SBML MML
fra00364 Fluorobenzoate degradation SBML MML
fra00380 Tryptophan metabolism SBML MML
fra00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
fra00401 Novobiocin biosynthesis SBML MML
fra00410 beta-Alanine metabolism SBML MML
fra00430 Taurine and hypotaurine metabolism SBML MML
fra00440 Phosphonate and phosphinate metabolism SBML MML
fra00450 Selenoamino acid metabolism SBML MML
fra00460 (Undocumented) SBML MML
fra00471 D-Glutamine and D-glutamate metabolism SBML MML
fra00473 D-Alanine metabolism SBML MML
fra00480 Glutathione metabolism SBML MML
fra00500 Starch and sucrose metabolism SBML MML
fra00510 (Undocumented) SBML MML
fra00520 Amino sugar and nucleotide sugar metabolism SBML MML
fra00521 Streptomycin biosynthesis SBML MML
fra00523 Polyketide sugar unit biosynthesis SBML MML
fra00530 (Undocumented) SBML MML
fra00550 Peptidoglycan biosynthesis SBML MML
fra00561 Glycerolipid metabolism SBML MML
fra00562 Inositol phosphate metabolism SBML MML
fra00564 Glycerophospholipid metabolism SBML MML
fra00565 Ether lipid metabolism SBML MML
fra00590 Arachidonic acid metabolism SBML MML
fra00592 alpha-Linolenic acid metabolism SBML MML
fra00620 Pyruvate metabolism SBML MML
fra00624 1- and 2-Methylnaphthalene degradation SBML MML
fra00625 (Undocumented) SBML MML
fra00626 Naphthalene and anthracene degradation SBML MML
fra00627 1,4-Dichlorobenzene degradation SBML MML
fra00628 Fluorene degradation SBML MML
fra00630 Glyoxylate and dicarboxylate metabolism SBML MML
fra00632 (Undocumented) SBML MML
fra00640 Propanoate metabolism SBML MML
fra00641 3-Chloroacrylic acid degradation SBML MML
fra00642 Ethylbenzene degradation SBML MML
fra00643 Styrene degradation SBML MML
fra00650 Butanoate metabolism SBML MML
fra00660 C5-Branched dibasic acid metabolism SBML MML
fra00670 One carbon pool by folate SBML MML
fra00680 Methane metabolism SBML MML
fra00710 (Undocumented) SBML MML
fra00720 (Undocumented) SBML MML
fra00730 Thiamine metabolism SBML MML
fra00740 Riboflavin metabolism SBML MML
fra00750 Vitamin B6 metabolism SBML MML
fra00760 Nicotinate and nicotinamide metabolism SBML MML
fra00770 Pantothenate and CoA biosynthesis SBML MML
fra00780 Biotin metabolism SBML MML
fra00785 Lipoic acid metabolism SBML MML
fra00790 Folate biosynthesis SBML MML
fra00791 Atrazine degradation SBML MML
fra00860 Porphyrin and chlorophyll metabolism SBML MML
fra00900 Terpenoid backbone biosynthesis SBML MML
fra00903 (Undocumented) SBML MML
fra00904 (Undocumented) SBML MML
fra00910 Nitrogen metabolism SBML MML
fra00920 Sulfur metabolism SBML MML
fra00930 Caprolactam degradation SBML MML
fra00940 (Undocumented) SBML MML
fra00941 (Undocumented) SBML MML
fra00950 (Undocumented) SBML MML
fra00960 (Undocumented) SBML MML
fra00970 Aminoacyl-tRNA biosynthesis SBML MML
fra00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
fra00982 (Undocumented) SBML MML
fra00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.