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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism gfo: Gramella forsetii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
gfo00010 Glycolysis / Gluconeogenesis SBML MML
gfo00020 Citrate cycle (TCA cycle) SBML MML
gfo00030 Pentose phosphate pathway SBML MML
gfo00040 Pentose and glucuronate interconversions SBML MML
gfo00051 Fructose and mannose metabolism SBML MML
gfo00052 Galactose metabolism SBML MML
gfo00053 Ascorbate and aldarate metabolism SBML MML
gfo00061 Fatty acid biosynthesis SBML MML
gfo00062 Fatty acid elongation in mitochondria SBML MML
gfo00071 Fatty acid metabolism SBML MML
gfo00072 Synthesis and degradation of ketone bodies SBML MML
gfo00100 (Undocumented) SBML MML
gfo00120 (Undocumented) SBML MML
gfo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
gfo00220 (Undocumented) SBML MML
gfo00230 Purine metabolism SBML MML
gfo00240 Pyrimidine metabolism SBML MML
gfo00251 (Undocumented) SBML MML
gfo00252 (Undocumented) SBML MML
gfo00260 Glycine, serine and threonine metabolism SBML MML
gfo00271 (Undocumented) SBML MML
gfo00272 (Undocumented) SBML MML
gfo00280 Valine, leucine and isoleucine degradation SBML MML
gfo00281 Geraniol degradation SBML MML
gfo00290 Valine, leucine and isoleucine biosynthesis SBML MML
gfo00300 Lysine biosynthesis SBML MML
gfo00310 Lysine degradation SBML MML
gfo00330 Arginine and proline metabolism SBML MML
gfo00340 Histidine metabolism SBML MML
gfo00350 Tyrosine metabolism SBML MML
gfo00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
gfo00360 Phenylalanine metabolism SBML MML
gfo00361 gamma-Hexachlorocyclohexane degradation SBML MML
gfo00362 (Undocumented) SBML MML
gfo00363 Bisphenol A degradation SBML MML
gfo00380 Tryptophan metabolism SBML MML
gfo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
gfo00401 Novobiocin biosynthesis SBML MML
gfo00410 beta-Alanine metabolism SBML MML
gfo00430 Taurine and hypotaurine metabolism SBML MML
gfo00440 Phosphonate and phosphinate metabolism SBML MML
gfo00450 Selenoamino acid metabolism SBML MML
gfo00460 (Undocumented) SBML MML
gfo00471 D-Glutamine and D-glutamate metabolism SBML MML
gfo00473 D-Alanine metabolism SBML MML
gfo00480 Glutathione metabolism SBML MML
gfo00500 Starch and sucrose metabolism SBML MML
gfo00510 (Undocumented) SBML MML
gfo00520 Amino sugar and nucleotide sugar metabolism SBML MML
gfo00521 Streptomycin biosynthesis SBML MML
gfo00523 Polyketide sugar unit biosynthesis SBML MML
gfo00530 (Undocumented) SBML MML
gfo00540 Lipopolysaccharide biosynthesis SBML MML
gfo00550 Peptidoglycan biosynthesis SBML MML
gfo00561 Glycerolipid metabolism SBML MML
gfo00564 Glycerophospholipid metabolism SBML MML
gfo00592 alpha-Linolenic acid metabolism SBML MML
gfo00620 Pyruvate metabolism SBML MML
gfo00623 2,4-Dichlorobenzoate degradation SBML MML
gfo00624 1- and 2-Methylnaphthalene degradation SBML MML
gfo00626 Naphthalene and anthracene degradation SBML MML
gfo00630 Glyoxylate and dicarboxylate metabolism SBML MML
gfo00631 1,2-Dichloroethane degradation SBML MML
gfo00632 (Undocumented) SBML MML
gfo00633 Trinitrotoluene degradation SBML MML
gfo00640 Propanoate metabolism SBML MML
gfo00641 3-Chloroacrylic acid degradation SBML MML
gfo00642 Ethylbenzene degradation SBML MML
gfo00643 Styrene degradation SBML MML
gfo00650 Butanoate metabolism SBML MML
gfo00660 C5-Branched dibasic acid metabolism SBML MML
gfo00670 One carbon pool by folate SBML MML
gfo00680 Methane metabolism SBML MML
gfo00710 (Undocumented) SBML MML
gfo00720 (Undocumented) SBML MML
gfo00730 Thiamine metabolism SBML MML
gfo00740 Riboflavin metabolism SBML MML
gfo00750 Vitamin B6 metabolism SBML MML
gfo00760 Nicotinate and nicotinamide metabolism SBML MML
gfo00770 Pantothenate and CoA biosynthesis SBML MML
gfo00780 Biotin metabolism SBML MML
gfo00785 Lipoic acid metabolism SBML MML
gfo00790 Folate biosynthesis SBML MML
gfo00791 Atrazine degradation SBML MML
gfo00860 Porphyrin and chlorophyll metabolism SBML MML
gfo00900 Terpenoid backbone biosynthesis SBML MML
gfo00903 (Undocumented) SBML MML
gfo00906 Carotenoid biosynthesis SBML MML
gfo00910 Nitrogen metabolism SBML MML
gfo00920 Sulfur metabolism SBML MML
gfo00930 Caprolactam degradation SBML MML
gfo00940 (Undocumented) SBML MML
gfo00941 (Undocumented) SBML MML
gfo00950 (Undocumented) SBML MML
gfo00960 (Undocumented) SBML MML
gfo00970 Aminoacyl-tRNA biosynthesis SBML MML
gfo00982 (Undocumented) SBML MML
gfo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.