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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism gox: Gluconobacter oxydans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
gox00010 Glycolysis / Gluconeogenesis SBML MML
gox00020 Citrate cycle (TCA cycle) SBML MML
gox00030 Pentose phosphate pathway SBML MML
gox00031 (Undocumented) SBML MML
gox00040 Pentose and glucuronate interconversions SBML MML
gox00051 Fructose and mannose metabolism SBML MML
gox00052 Galactose metabolism SBML MML
gox00053 Ascorbate and aldarate metabolism SBML MML
gox00061 Fatty acid biosynthesis SBML MML
gox00071 Fatty acid metabolism SBML MML
gox00100 (Undocumented) SBML MML
gox00120 (Undocumented) SBML MML
gox00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
gox00220 (Undocumented) SBML MML
gox00230 Purine metabolism SBML MML
gox00240 Pyrimidine metabolism SBML MML
gox00251 (Undocumented) SBML MML
gox00252 (Undocumented) SBML MML
gox00260 Glycine, serine and threonine metabolism SBML MML
gox00271 (Undocumented) SBML MML
gox00272 (Undocumented) SBML MML
gox00280 Valine, leucine and isoleucine degradation SBML MML
gox00281 Geraniol degradation SBML MML
gox00290 Valine, leucine and isoleucine biosynthesis SBML MML
gox00300 Lysine biosynthesis SBML MML
gox00310 Lysine degradation SBML MML
gox00330 Arginine and proline metabolism SBML MML
gox00340 Histidine metabolism SBML MML
gox00350 Tyrosine metabolism SBML MML
gox00360 Phenylalanine metabolism SBML MML
gox00361 gamma-Hexachlorocyclohexane degradation SBML MML
gox00363 Bisphenol A degradation SBML MML
gox00364 Fluorobenzoate degradation SBML MML
gox00380 Tryptophan metabolism SBML MML
gox00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
gox00401 Novobiocin biosynthesis SBML MML
gox00410 beta-Alanine metabolism SBML MML
gox00450 Selenoamino acid metabolism SBML MML
gox00460 (Undocumented) SBML MML
gox00471 D-Glutamine and D-glutamate metabolism SBML MML
gox00473 D-Alanine metabolism SBML MML
gox00480 Glutathione metabolism SBML MML
gox00500 Starch and sucrose metabolism SBML MML
gox00520 Amino sugar and nucleotide sugar metabolism SBML MML
gox00521 Streptomycin biosynthesis SBML MML
gox00523 Polyketide sugar unit biosynthesis SBML MML
gox00530 (Undocumented) SBML MML
gox00540 Lipopolysaccharide biosynthesis SBML MML
gox00550 Peptidoglycan biosynthesis SBML MML
gox00561 Glycerolipid metabolism SBML MML
gox00562 Inositol phosphate metabolism SBML MML
gox00564 Glycerophospholipid metabolism SBML MML
gox00565 Ether lipid metabolism SBML MML
gox00590 Arachidonic acid metabolism SBML MML
gox00600 Sphingolipid metabolism SBML MML
gox00620 Pyruvate metabolism SBML MML
gox00624 1- and 2-Methylnaphthalene degradation SBML MML
gox00626 Naphthalene and anthracene degradation SBML MML
gox00627 1,4-Dichlorobenzene degradation SBML MML
gox00630 Glyoxylate and dicarboxylate metabolism SBML MML
gox00631 1,2-Dichloroethane degradation SBML MML
gox00632 (Undocumented) SBML MML
gox00640 Propanoate metabolism SBML MML
gox00641 3-Chloroacrylic acid degradation SBML MML
gox00650 Butanoate metabolism SBML MML
gox00670 One carbon pool by folate SBML MML
gox00680 Methane metabolism SBML MML
gox00710 (Undocumented) SBML MML
gox00720 (Undocumented) SBML MML
gox00730 Thiamine metabolism SBML MML
gox00740 Riboflavin metabolism SBML MML
gox00750 Vitamin B6 metabolism SBML MML
gox00760 Nicotinate and nicotinamide metabolism SBML MML
gox00770 Pantothenate and CoA biosynthesis SBML MML
gox00780 Biotin metabolism SBML MML
gox00785 Lipoic acid metabolism SBML MML
gox00790 Folate biosynthesis SBML MML
gox00860 Porphyrin and chlorophyll metabolism SBML MML
gox00900 Terpenoid backbone biosynthesis SBML MML
gox00903 (Undocumented) SBML MML
gox00910 Nitrogen metabolism SBML MML
gox00920 Sulfur metabolism SBML MML
gox00941 (Undocumented) SBML MML
gox00960 (Undocumented) SBML MML
gox00970 Aminoacyl-tRNA biosynthesis SBML MML
gox00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
gox00982 (Undocumented) SBML MML
gox00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.