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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hac: Helicobacter acinonychis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hac00010 Glycolysis / Gluconeogenesis SBML MML
hac00020 Citrate cycle (TCA cycle) SBML MML
hac00030 Pentose phosphate pathway SBML MML
hac00040 Pentose and glucuronate interconversions SBML MML
hac00051 Fructose and mannose metabolism SBML MML
hac00052 Galactose metabolism SBML MML
hac00061 Fatty acid biosynthesis SBML MML
hac00071 Fatty acid metabolism SBML MML
hac00072 Synthesis and degradation of ketone bodies SBML MML
hac00100 (Undocumented) SBML MML
hac00120 (Undocumented) SBML MML
hac00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hac00220 (Undocumented) SBML MML
hac00230 Purine metabolism SBML MML
hac00240 Pyrimidine metabolism SBML MML
hac00251 (Undocumented) SBML MML
hac00252 (Undocumented) SBML MML
hac00260 Glycine, serine and threonine metabolism SBML MML
hac00271 (Undocumented) SBML MML
hac00272 (Undocumented) SBML MML
hac00280 Valine, leucine and isoleucine degradation SBML MML
hac00290 Valine, leucine and isoleucine biosynthesis SBML MML
hac00300 Lysine biosynthesis SBML MML
hac00310 Lysine degradation SBML MML
hac00330 Arginine and proline metabolism SBML MML
hac00340 Histidine metabolism SBML MML
hac00350 Tyrosine metabolism SBML MML
hac00360 Phenylalanine metabolism SBML MML
hac00362 (Undocumented) SBML MML
hac00380 Tryptophan metabolism SBML MML
hac00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hac00410 beta-Alanine metabolism SBML MML
hac00430 Taurine and hypotaurine metabolism SBML MML
hac00450 Selenoamino acid metabolism SBML MML
hac00460 (Undocumented) SBML MML
hac00471 D-Glutamine and D-glutamate metabolism SBML MML
hac00473 D-Alanine metabolism SBML MML
hac00480 Glutathione metabolism SBML MML
hac00500 Starch and sucrose metabolism SBML MML
hac00520 Amino sugar and nucleotide sugar metabolism SBML MML
hac00530 (Undocumented) SBML MML
hac00540 Lipopolysaccharide biosynthesis SBML MML
hac00550 Peptidoglycan biosynthesis SBML MML
hac00561 Glycerolipid metabolism SBML MML
hac00564 Glycerophospholipid metabolism SBML MML
hac00620 Pyruvate metabolism SBML MML
hac00628 Fluorene degradation SBML MML
hac00630 Glyoxylate and dicarboxylate metabolism SBML MML
hac00632 (Undocumented) SBML MML
hac00640 Propanoate metabolism SBML MML
hac00643 Styrene degradation SBML MML
hac00650 Butanoate metabolism SBML MML
hac00670 One carbon pool by folate SBML MML
hac00680 Methane metabolism SBML MML
hac00710 (Undocumented) SBML MML
hac00720 (Undocumented) SBML MML
hac00730 Thiamine metabolism SBML MML
hac00740 Riboflavin metabolism SBML MML
hac00750 Vitamin B6 metabolism SBML MML
hac00760 Nicotinate and nicotinamide metabolism SBML MML
hac00770 Pantothenate and CoA biosynthesis SBML MML
hac00780 Biotin metabolism SBML MML
hac00790 Folate biosynthesis SBML MML
hac00791 Atrazine degradation SBML MML
hac00860 Porphyrin and chlorophyll metabolism SBML MML
hac00900 Terpenoid backbone biosynthesis SBML MML
hac00903 (Undocumented) SBML MML
hac00910 Nitrogen metabolism SBML MML
hac00920 Sulfur metabolism SBML MML
hac00930 Caprolactam degradation SBML MML
hac00940 (Undocumented) SBML MML
hac00950 (Undocumented) SBML MML
hac00970 Aminoacyl-tRNA biosynthesis SBML MML
hac00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.