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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism har: Herminiimonas arsenicoxydans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
har00010 Glycolysis / Gluconeogenesis SBML MML
har00020 Citrate cycle (TCA cycle) SBML MML
har00030 Pentose phosphate pathway SBML MML
har00031 (Undocumented) SBML MML
har00040 Pentose and glucuronate interconversions SBML MML
har00051 Fructose and mannose metabolism SBML MML
har00052 Galactose metabolism SBML MML
har00053 Ascorbate and aldarate metabolism SBML MML
har00061 Fatty acid biosynthesis SBML MML
har00071 Fatty acid metabolism SBML MML
har00072 Synthesis and degradation of ketone bodies SBML MML
har00100 (Undocumented) SBML MML
har00120 (Undocumented) SBML MML
har00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
har00220 (Undocumented) SBML MML
har00230 Purine metabolism SBML MML
har00240 Pyrimidine metabolism SBML MML
har00251 (Undocumented) SBML MML
har00252 (Undocumented) SBML MML
har00260 Glycine, serine and threonine metabolism SBML MML
har00271 (Undocumented) SBML MML
har00272 (Undocumented) SBML MML
har00280 Valine, leucine and isoleucine degradation SBML MML
har00290 Valine, leucine and isoleucine biosynthesis SBML MML
har00300 Lysine biosynthesis SBML MML
har00310 Lysine degradation SBML MML
har00330 Arginine and proline metabolism SBML MML
har00340 Histidine metabolism SBML MML
har00350 Tyrosine metabolism SBML MML
har00360 Phenylalanine metabolism SBML MML
har00361 gamma-Hexachlorocyclohexane degradation SBML MML
har00362 (Undocumented) SBML MML
har00364 Fluorobenzoate degradation SBML MML
har00380 Tryptophan metabolism SBML MML
har00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
har00401 Novobiocin biosynthesis SBML MML
har00410 beta-Alanine metabolism SBML MML
har00430 Taurine and hypotaurine metabolism SBML MML
har00450 Selenoamino acid metabolism SBML MML
har00460 (Undocumented) SBML MML
har00471 D-Glutamine and D-glutamate metabolism SBML MML
har00472 D-Arginine and D-ornithine metabolism SBML MML
har00473 D-Alanine metabolism SBML MML
har00480 Glutathione metabolism SBML MML
har00500 Starch and sucrose metabolism SBML MML
har00520 Amino sugar and nucleotide sugar metabolism SBML MML
har00521 Streptomycin biosynthesis SBML MML
har00523 Polyketide sugar unit biosynthesis SBML MML
har00530 (Undocumented) SBML MML
har00540 Lipopolysaccharide biosynthesis SBML MML
har00550 Peptidoglycan biosynthesis SBML MML
har00561 Glycerolipid metabolism SBML MML
har00562 Inositol phosphate metabolism SBML MML
har00564 Glycerophospholipid metabolism SBML MML
har00590 Arachidonic acid metabolism SBML MML
har00620 Pyruvate metabolism SBML MML
har00623 2,4-Dichlorobenzoate degradation SBML MML
har00624 1- and 2-Methylnaphthalene degradation SBML MML
har00627 1,4-Dichlorobenzene degradation SBML MML
har00628 Fluorene degradation SBML MML
har00630 Glyoxylate and dicarboxylate metabolism SBML MML
har00631 1,2-Dichloroethane degradation SBML MML
har00632 (Undocumented) SBML MML
har00633 Trinitrotoluene degradation SBML MML
har00640 Propanoate metabolism SBML MML
har00641 3-Chloroacrylic acid degradation SBML MML
har00643 Styrene degradation SBML MML
har00650 Butanoate metabolism SBML MML
har00660 C5-Branched dibasic acid metabolism SBML MML
har00670 One carbon pool by folate SBML MML
har00680 Methane metabolism SBML MML
har00710 (Undocumented) SBML MML
har00720 (Undocumented) SBML MML
har00730 Thiamine metabolism SBML MML
har00740 Riboflavin metabolism SBML MML
har00750 Vitamin B6 metabolism SBML MML
har00760 Nicotinate and nicotinamide metabolism SBML MML
har00770 Pantothenate and CoA biosynthesis SBML MML
har00780 Biotin metabolism SBML MML
har00785 Lipoic acid metabolism SBML MML
har00790 Folate biosynthesis SBML MML
har00860 Porphyrin and chlorophyll metabolism SBML MML
har00900 Terpenoid backbone biosynthesis SBML MML
har00903 (Undocumented) SBML MML
har00910 Nitrogen metabolism SBML MML
har00920 Sulfur metabolism SBML MML
har00930 Caprolactam degradation SBML MML
har00940 (Undocumented) SBML MML
har00950 (Undocumented) SBML MML
har00970 Aminoacyl-tRNA biosynthesis SBML MML
har00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
har00982 (Undocumented) SBML MML
har00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.