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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hha: Halorhodospira halophila

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hha00010 Glycolysis / Gluconeogenesis SBML MML
hha00020 Citrate cycle (TCA cycle) SBML MML
hha00030 Pentose phosphate pathway SBML MML
hha00040 Pentose and glucuronate interconversions SBML MML
hha00051 Fructose and mannose metabolism SBML MML
hha00052 Galactose metabolism SBML MML
hha00053 Ascorbate and aldarate metabolism SBML MML
hha00061 Fatty acid biosynthesis SBML MML
hha00071 Fatty acid metabolism SBML MML
hha00100 (Undocumented) SBML MML
hha00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hha00220 (Undocumented) SBML MML
hha00230 Purine metabolism SBML MML
hha00240 Pyrimidine metabolism SBML MML
hha00251 (Undocumented) SBML MML
hha00252 (Undocumented) SBML MML
hha00260 Glycine, serine and threonine metabolism SBML MML
hha00271 (Undocumented) SBML MML
hha00272 (Undocumented) SBML MML
hha00280 Valine, leucine and isoleucine degradation SBML MML
hha00290 Valine, leucine and isoleucine biosynthesis SBML MML
hha00300 Lysine biosynthesis SBML MML
hha00310 Lysine degradation SBML MML
hha00330 Arginine and proline metabolism SBML MML
hha00340 Histidine metabolism SBML MML
hha00350 Tyrosine metabolism SBML MML
hha00360 Phenylalanine metabolism SBML MML
hha00361 gamma-Hexachlorocyclohexane degradation SBML MML
hha00380 Tryptophan metabolism SBML MML
hha00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hha00401 Novobiocin biosynthesis SBML MML
hha00410 beta-Alanine metabolism SBML MML
hha00430 Taurine and hypotaurine metabolism SBML MML
hha00450 Selenoamino acid metabolism SBML MML
hha00460 (Undocumented) SBML MML
hha00471 D-Glutamine and D-glutamate metabolism SBML MML
hha00472 D-Arginine and D-ornithine metabolism SBML MML
hha00473 D-Alanine metabolism SBML MML
hha00480 Glutathione metabolism SBML MML
hha00500 Starch and sucrose metabolism SBML MML
hha00520 Amino sugar and nucleotide sugar metabolism SBML MML
hha00521 Streptomycin biosynthesis SBML MML
hha00530 (Undocumented) SBML MML
hha00540 Lipopolysaccharide biosynthesis SBML MML
hha00550 Peptidoglycan biosynthesis SBML MML
hha00561 Glycerolipid metabolism SBML MML
hha00562 Inositol phosphate metabolism SBML MML
hha00564 Glycerophospholipid metabolism SBML MML
hha00620 Pyruvate metabolism SBML MML
hha00624 1- and 2-Methylnaphthalene degradation SBML MML
hha00630 Glyoxylate and dicarboxylate metabolism SBML MML
hha00632 (Undocumented) SBML MML
hha00640 Propanoate metabolism SBML MML
hha00641 3-Chloroacrylic acid degradation SBML MML
hha00643 Styrene degradation SBML MML
hha00650 Butanoate metabolism SBML MML
hha00660 C5-Branched dibasic acid metabolism SBML MML
hha00670 One carbon pool by folate SBML MML
hha00680 Methane metabolism SBML MML
hha00710 (Undocumented) SBML MML
hha00720 (Undocumented) SBML MML
hha00730 Thiamine metabolism SBML MML
hha00740 Riboflavin metabolism SBML MML
hha00750 Vitamin B6 metabolism SBML MML
hha00760 Nicotinate and nicotinamide metabolism SBML MML
hha00770 Pantothenate and CoA biosynthesis SBML MML
hha00780 Biotin metabolism SBML MML
hha00785 Lipoic acid metabolism SBML MML
hha00790 Folate biosynthesis SBML MML
hha00860 Porphyrin and chlorophyll metabolism SBML MML
hha00900 Terpenoid backbone biosynthesis SBML MML
hha00906 Carotenoid biosynthesis SBML MML
hha00910 Nitrogen metabolism SBML MML
hha00920 Sulfur metabolism SBML MML
hha00940 (Undocumented) SBML MML
hha00970 Aminoacyl-tRNA biosynthesis SBML MML
hha00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
hha00982 (Undocumented) SBML MML
hha00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.