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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hma: Haloarcula marismortui

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hma00010 Glycolysis / Gluconeogenesis SBML MML
hma00020 Citrate cycle (TCA cycle) SBML MML
hma00030 Pentose phosphate pathway SBML MML
hma00040 Pentose and glucuronate interconversions SBML MML
hma00051 Fructose and mannose metabolism SBML MML
hma00052 Galactose metabolism SBML MML
hma00053 Ascorbate and aldarate metabolism SBML MML
hma00061 Fatty acid biosynthesis SBML MML
hma00062 Fatty acid elongation in mitochondria SBML MML
hma00071 Fatty acid metabolism SBML MML
hma00072 Synthesis and degradation of ketone bodies SBML MML
hma00100 (Undocumented) SBML MML
hma00120 (Undocumented) SBML MML
hma00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hma00220 (Undocumented) SBML MML
hma00230 Purine metabolism SBML MML
hma00240 Pyrimidine metabolism SBML MML
hma00251 (Undocumented) SBML MML
hma00252 (Undocumented) SBML MML
hma00260 Glycine, serine and threonine metabolism SBML MML
hma00271 (Undocumented) SBML MML
hma00272 (Undocumented) SBML MML
hma00280 Valine, leucine and isoleucine degradation SBML MML
hma00281 Geraniol degradation SBML MML
hma00290 Valine, leucine and isoleucine biosynthesis SBML MML
hma00300 Lysine biosynthesis SBML MML
hma00310 Lysine degradation SBML MML
hma00330 Arginine and proline metabolism SBML MML
hma00340 Histidine metabolism SBML MML
hma00350 Tyrosine metabolism SBML MML
hma00360 Phenylalanine metabolism SBML MML
hma00361 gamma-Hexachlorocyclohexane degradation SBML MML
hma00362 (Undocumented) SBML MML
hma00380 Tryptophan metabolism SBML MML
hma00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hma00401 Novobiocin biosynthesis SBML MML
hma00410 beta-Alanine metabolism SBML MML
hma00440 Phosphonate and phosphinate metabolism SBML MML
hma00450 Selenoamino acid metabolism SBML MML
hma00460 (Undocumented) SBML MML
hma00480 Glutathione metabolism SBML MML
hma00500 Starch and sucrose metabolism SBML MML
hma00520 Amino sugar and nucleotide sugar metabolism SBML MML
hma00521 Streptomycin biosynthesis SBML MML
hma00523 Polyketide sugar unit biosynthesis SBML MML
hma00530 (Undocumented) SBML MML
hma00550 Peptidoglycan biosynthesis SBML MML
hma00561 Glycerolipid metabolism SBML MML
hma00562 Inositol phosphate metabolism SBML MML
hma00564 Glycerophospholipid metabolism SBML MML
hma00592 alpha-Linolenic acid metabolism SBML MML
hma00600 Sphingolipid metabolism SBML MML
hma00620 Pyruvate metabolism SBML MML
hma00624 1- and 2-Methylnaphthalene degradation SBML MML
hma00626 Naphthalene and anthracene degradation SBML MML
hma00630 Glyoxylate and dicarboxylate metabolism SBML MML
hma00631 1,2-Dichloroethane degradation SBML MML
hma00632 (Undocumented) SBML MML
hma00640 Propanoate metabolism SBML MML
hma00641 3-Chloroacrylic acid degradation SBML MML
hma00650 Butanoate metabolism SBML MML
hma00660 C5-Branched dibasic acid metabolism SBML MML
hma00670 One carbon pool by folate SBML MML
hma00680 Methane metabolism SBML MML
hma00710 (Undocumented) SBML MML
hma00720 (Undocumented) SBML MML
hma00730 Thiamine metabolism SBML MML
hma00740 Riboflavin metabolism SBML MML
hma00750 Vitamin B6 metabolism SBML MML
hma00760 Nicotinate and nicotinamide metabolism SBML MML
hma00770 Pantothenate and CoA biosynthesis SBML MML
hma00780 Biotin metabolism SBML MML
hma00785 Lipoic acid metabolism SBML MML
hma00790 Folate biosynthesis SBML MML
hma00860 Porphyrin and chlorophyll metabolism SBML MML
hma00900 Terpenoid backbone biosynthesis SBML MML
hma00903 (Undocumented) SBML MML
hma00906 Carotenoid biosynthesis SBML MML
hma00910 Nitrogen metabolism SBML MML
hma00920 Sulfur metabolism SBML MML
hma00930 Caprolactam degradation SBML MML
hma00950 (Undocumented) SBML MML
hma00970 Aminoacyl-tRNA biosynthesis SBML MML
hma00982 (Undocumented) SBML MML
hma00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.