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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hpj: Helicobacter pylori J99

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hpj00010 Glycolysis / Gluconeogenesis SBML MML
hpj00020 Citrate cycle (TCA cycle) SBML MML
hpj00030 Pentose phosphate pathway SBML MML
hpj00040 Pentose and glucuronate interconversions SBML MML
hpj00051 Fructose and mannose metabolism SBML MML
hpj00052 Galactose metabolism SBML MML
hpj00061 Fatty acid biosynthesis SBML MML
hpj00100 (Undocumented) SBML MML
hpj00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hpj00220 (Undocumented) SBML MML
hpj00230 Purine metabolism SBML MML
hpj00240 Pyrimidine metabolism SBML MML
hpj00251 (Undocumented) SBML MML
hpj00252 (Undocumented) SBML MML
hpj00260 Glycine, serine and threonine metabolism SBML MML
hpj00271 (Undocumented) SBML MML
hpj00272 (Undocumented) SBML MML
hpj00280 Valine, leucine and isoleucine degradation SBML MML
hpj00290 Valine, leucine and isoleucine biosynthesis SBML MML
hpj00300 Lysine biosynthesis SBML MML
hpj00310 Lysine degradation SBML MML
hpj00330 Arginine and proline metabolism SBML MML
hpj00340 Histidine metabolism SBML MML
hpj00350 Tyrosine metabolism SBML MML
hpj00360 Phenylalanine metabolism SBML MML
hpj00362 (Undocumented) SBML MML
hpj00380 Tryptophan metabolism SBML MML
hpj00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hpj00410 beta-Alanine metabolism SBML MML
hpj00430 Taurine and hypotaurine metabolism SBML MML
hpj00450 Selenoamino acid metabolism SBML MML
hpj00460 (Undocumented) SBML MML
hpj00471 D-Glutamine and D-glutamate metabolism SBML MML
hpj00473 D-Alanine metabolism SBML MML
hpj00480 Glutathione metabolism SBML MML
hpj00500 Starch and sucrose metabolism SBML MML
hpj00530 (Undocumented) SBML MML
hpj00540 Lipopolysaccharide biosynthesis SBML MML
hpj00550 Peptidoglycan biosynthesis SBML MML
hpj00561 Glycerolipid metabolism SBML MML
hpj00564 Glycerophospholipid metabolism SBML MML
hpj00620 Pyruvate metabolism SBML MML
hpj00628 Fluorene degradation SBML MML
hpj00630 Glyoxylate and dicarboxylate metabolism SBML MML
hpj00632 (Undocumented) SBML MML
hpj00640 Propanoate metabolism SBML MML
hpj00643 Styrene degradation SBML MML
hpj00650 Butanoate metabolism SBML MML
hpj00670 One carbon pool by folate SBML MML
hpj00680 Methane metabolism SBML MML
hpj00710 (Undocumented) SBML MML
hpj00720 (Undocumented) SBML MML
hpj00730 Thiamine metabolism SBML MML
hpj00740 Riboflavin metabolism SBML MML
hpj00750 Vitamin B6 metabolism SBML MML
hpj00760 Nicotinate and nicotinamide metabolism SBML MML
hpj00770 Pantothenate and CoA biosynthesis SBML MML
hpj00780 Biotin metabolism SBML MML
hpj00790 Folate biosynthesis SBML MML
hpj00791 Atrazine degradation SBML MML
hpj00860 Porphyrin and chlorophyll metabolism SBML MML
hpj00900 Terpenoid backbone biosynthesis SBML MML
hpj00910 Nitrogen metabolism SBML MML
hpj00920 Sulfur metabolism SBML MML
hpj00930 Caprolactam degradation SBML MML
hpj00940 (Undocumented) SBML MML
hpj00950 (Undocumented) SBML MML
hpj00970 Aminoacyl-tRNA biosynthesis SBML MML
hpj00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.