This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism hsm: Haemophilus somnus 2336

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
hsm00010 Glycolysis / Gluconeogenesis SBML MML
hsm00020 Citrate cycle (TCA cycle) SBML MML
hsm00030 Pentose phosphate pathway SBML MML
hsm00031 (Undocumented) SBML MML
hsm00040 Pentose and glucuronate interconversions SBML MML
hsm00051 Fructose and mannose metabolism SBML MML
hsm00052 Galactose metabolism SBML MML
hsm00053 Ascorbate and aldarate metabolism SBML MML
hsm00061 Fatty acid biosynthesis SBML MML
hsm00071 Fatty acid metabolism SBML MML
hsm00072 Synthesis and degradation of ketone bodies SBML MML
hsm00100 (Undocumented) SBML MML
hsm00120 (Undocumented) SBML MML
hsm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
hsm00220 (Undocumented) SBML MML
hsm00230 Purine metabolism SBML MML
hsm00240 Pyrimidine metabolism SBML MML
hsm00251 (Undocumented) SBML MML
hsm00252 (Undocumented) SBML MML
hsm00260 Glycine, serine and threonine metabolism SBML MML
hsm00271 (Undocumented) SBML MML
hsm00272 (Undocumented) SBML MML
hsm00280 Valine, leucine and isoleucine degradation SBML MML
hsm00290 Valine, leucine and isoleucine biosynthesis SBML MML
hsm00300 Lysine biosynthesis SBML MML
hsm00310 Lysine degradation SBML MML
hsm00330 Arginine and proline metabolism SBML MML
hsm00340 Histidine metabolism SBML MML
hsm00350 Tyrosine metabolism SBML MML
hsm00360 Phenylalanine metabolism SBML MML
hsm00362 (Undocumented) SBML MML
hsm00380 Tryptophan metabolism SBML MML
hsm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
hsm00401 Novobiocin biosynthesis SBML MML
hsm00430 Taurine and hypotaurine metabolism SBML MML
hsm00450 Selenoamino acid metabolism SBML MML
hsm00460 (Undocumented) SBML MML
hsm00471 D-Glutamine and D-glutamate metabolism SBML MML
hsm00473 D-Alanine metabolism SBML MML
hsm00480 Glutathione metabolism SBML MML
hsm00500 Starch and sucrose metabolism SBML MML
hsm00520 Amino sugar and nucleotide sugar metabolism SBML MML
hsm00521 Streptomycin biosynthesis SBML MML
hsm00530 (Undocumented) SBML MML
hsm00540 Lipopolysaccharide biosynthesis SBML MML
hsm00550 Peptidoglycan biosynthesis SBML MML
hsm00561 Glycerolipid metabolism SBML MML
hsm00562 Inositol phosphate metabolism SBML MML
hsm00564 Glycerophospholipid metabolism SBML MML
hsm00620 Pyruvate metabolism SBML MML
hsm00630 Glyoxylate and dicarboxylate metabolism SBML MML
hsm00632 (Undocumented) SBML MML
hsm00633 Trinitrotoluene degradation SBML MML
hsm00640 Propanoate metabolism SBML MML
hsm00650 Butanoate metabolism SBML MML
hsm00660 C5-Branched dibasic acid metabolism SBML MML
hsm00670 One carbon pool by folate SBML MML
hsm00680 Methane metabolism SBML MML
hsm00710 (Undocumented) SBML MML
hsm00720 (Undocumented) SBML MML
hsm00730 Thiamine metabolism SBML MML
hsm00740 Riboflavin metabolism SBML MML
hsm00750 Vitamin B6 metabolism SBML MML
hsm00760 Nicotinate and nicotinamide metabolism SBML MML
hsm00770 Pantothenate and CoA biosynthesis SBML MML
hsm00780 Biotin metabolism SBML MML
hsm00790 Folate biosynthesis SBML MML
hsm00791 Atrazine degradation SBML MML
hsm00860 Porphyrin and chlorophyll metabolism SBML MML
hsm00900 Terpenoid backbone biosynthesis SBML MML
hsm00910 Nitrogen metabolism SBML MML
hsm00920 Sulfur metabolism SBML MML
hsm00940 (Undocumented) SBML MML
hsm00950 (Undocumented) SBML MML
hsm00970 Aminoacyl-tRNA biosynthesis SBML MML
hsm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.