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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lbr: Lactobacillus brevis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lbr00010 Glycolysis / Gluconeogenesis SBML MML
lbr00020 Citrate cycle (TCA cycle) SBML MML
lbr00030 Pentose phosphate pathway SBML MML
lbr00040 Pentose and glucuronate interconversions SBML MML
lbr00051 Fructose and mannose metabolism SBML MML
lbr00052 Galactose metabolism SBML MML
lbr00061 Fatty acid biosynthesis SBML MML
lbr00071 Fatty acid metabolism SBML MML
lbr00072 Synthesis and degradation of ketone bodies SBML MML
lbr00100 (Undocumented) SBML MML
lbr00120 (Undocumented) SBML MML
lbr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lbr00140 (Undocumented) SBML MML
lbr00220 (Undocumented) SBML MML
lbr00230 Purine metabolism SBML MML
lbr00240 Pyrimidine metabolism SBML MML
lbr00251 (Undocumented) SBML MML
lbr00252 (Undocumented) SBML MML
lbr00260 Glycine, serine and threonine metabolism SBML MML
lbr00271 (Undocumented) SBML MML
lbr00272 (Undocumented) SBML MML
lbr00280 Valine, leucine and isoleucine degradation SBML MML
lbr00290 Valine, leucine and isoleucine biosynthesis SBML MML
lbr00300 Lysine biosynthesis SBML MML
lbr00310 Lysine degradation SBML MML
lbr00330 Arginine and proline metabolism SBML MML
lbr00340 Histidine metabolism SBML MML
lbr00350 Tyrosine metabolism SBML MML
lbr00360 Phenylalanine metabolism SBML MML
lbr00362 (Undocumented) SBML MML
lbr00380 Tryptophan metabolism SBML MML
lbr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lbr00410 beta-Alanine metabolism SBML MML
lbr00430 Taurine and hypotaurine metabolism SBML MML
lbr00450 Selenoamino acid metabolism SBML MML
lbr00460 (Undocumented) SBML MML
lbr00471 D-Glutamine and D-glutamate metabolism SBML MML
lbr00473 D-Alanine metabolism SBML MML
lbr00480 Glutathione metabolism SBML MML
lbr00500 Starch and sucrose metabolism SBML MML
lbr00520 Amino sugar and nucleotide sugar metabolism SBML MML
lbr00521 Streptomycin biosynthesis SBML MML
lbr00530 (Undocumented) SBML MML
lbr00550 Peptidoglycan biosynthesis SBML MML
lbr00561 Glycerolipid metabolism SBML MML
lbr00562 Inositol phosphate metabolism SBML MML
lbr00564 Glycerophospholipid metabolism SBML MML
lbr00590 Arachidonic acid metabolism SBML MML
lbr00600 Sphingolipid metabolism SBML MML
lbr00620 Pyruvate metabolism SBML MML
lbr00622 Toluene and xylene degradation SBML MML
lbr00624 1- and 2-Methylnaphthalene degradation SBML MML
lbr00628 Fluorene degradation SBML MML
lbr00630 Glyoxylate and dicarboxylate metabolism SBML MML
lbr00632 (Undocumented) SBML MML
lbr00640 Propanoate metabolism SBML MML
lbr00641 3-Chloroacrylic acid degradation SBML MML
lbr00650 Butanoate metabolism SBML MML
lbr00660 C5-Branched dibasic acid metabolism SBML MML
lbr00670 One carbon pool by folate SBML MML
lbr00680 Methane metabolism SBML MML
lbr00710 (Undocumented) SBML MML
lbr00720 (Undocumented) SBML MML
lbr00730 Thiamine metabolism SBML MML
lbr00740 Riboflavin metabolism SBML MML
lbr00750 Vitamin B6 metabolism SBML MML
lbr00760 Nicotinate and nicotinamide metabolism SBML MML
lbr00770 Pantothenate and CoA biosynthesis SBML MML
lbr00780 Biotin metabolism SBML MML
lbr00785 Lipoic acid metabolism SBML MML
lbr00790 Folate biosynthesis SBML MML
lbr00860 Porphyrin and chlorophyll metabolism SBML MML
lbr00900 Terpenoid backbone biosynthesis SBML MML
lbr00910 Nitrogen metabolism SBML MML
lbr00930 Caprolactam degradation SBML MML
lbr00940 (Undocumented) SBML MML
lbr00950 (Undocumented) SBML MML
lbr00960 (Undocumented) SBML MML
lbr00970 Aminoacyl-tRNA biosynthesis SBML MML
lbr00982 (Undocumented) SBML MML
lbr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.