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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lfe: Lactobacillus fermentum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lfe00010 Glycolysis / Gluconeogenesis SBML MML
lfe00020 Citrate cycle (TCA cycle) SBML MML
lfe00030 Pentose phosphate pathway SBML MML
lfe00040 Pentose and glucuronate interconversions SBML MML
lfe00051 Fructose and mannose metabolism SBML MML
lfe00052 Galactose metabolism SBML MML
lfe00061 Fatty acid biosynthesis SBML MML
lfe00071 Fatty acid metabolism SBML MML
lfe00072 Synthesis and degradation of ketone bodies SBML MML
lfe00100 (Undocumented) SBML MML
lfe00120 (Undocumented) SBML MML
lfe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lfe00220 (Undocumented) SBML MML
lfe00230 Purine metabolism SBML MML
lfe00240 Pyrimidine metabolism SBML MML
lfe00251 (Undocumented) SBML MML
lfe00252 (Undocumented) SBML MML
lfe00260 Glycine, serine and threonine metabolism SBML MML
lfe00271 (Undocumented) SBML MML
lfe00272 (Undocumented) SBML MML
lfe00280 Valine, leucine and isoleucine degradation SBML MML
lfe00290 Valine, leucine and isoleucine biosynthesis SBML MML
lfe00300 Lysine biosynthesis SBML MML
lfe00330 Arginine and proline metabolism SBML MML
lfe00340 Histidine metabolism SBML MML
lfe00350 Tyrosine metabolism SBML MML
lfe00360 Phenylalanine metabolism SBML MML
lfe00362 (Undocumented) SBML MML
lfe00380 Tryptophan metabolism SBML MML
lfe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lfe00401 Novobiocin biosynthesis SBML MML
lfe00430 Taurine and hypotaurine metabolism SBML MML
lfe00440 Phosphonate and phosphinate metabolism SBML MML
lfe00450 Selenoamino acid metabolism SBML MML
lfe00460 (Undocumented) SBML MML
lfe00471 D-Glutamine and D-glutamate metabolism SBML MML
lfe00473 D-Alanine metabolism SBML MML
lfe00480 Glutathione metabolism SBML MML
lfe00500 Starch and sucrose metabolism SBML MML
lfe00520 Amino sugar and nucleotide sugar metabolism SBML MML
lfe00521 Streptomycin biosynthesis SBML MML
lfe00523 Polyketide sugar unit biosynthesis SBML MML
lfe00530 (Undocumented) SBML MML
lfe00550 Peptidoglycan biosynthesis SBML MML
lfe00561 Glycerolipid metabolism SBML MML
lfe00562 Inositol phosphate metabolism SBML MML
lfe00564 Glycerophospholipid metabolism SBML MML
lfe00600 Sphingolipid metabolism SBML MML
lfe00620 Pyruvate metabolism SBML MML
lfe00622 Toluene and xylene degradation SBML MML
lfe00624 1- and 2-Methylnaphthalene degradation SBML MML
lfe00628 Fluorene degradation SBML MML
lfe00630 Glyoxylate and dicarboxylate metabolism SBML MML
lfe00632 (Undocumented) SBML MML
lfe00640 Propanoate metabolism SBML MML
lfe00641 3-Chloroacrylic acid degradation SBML MML
lfe00650 Butanoate metabolism SBML MML
lfe00660 C5-Branched dibasic acid metabolism SBML MML
lfe00670 One carbon pool by folate SBML MML
lfe00680 Methane metabolism SBML MML
lfe00710 (Undocumented) SBML MML
lfe00730 Thiamine metabolism SBML MML
lfe00740 Riboflavin metabolism SBML MML
lfe00750 Vitamin B6 metabolism SBML MML
lfe00760 Nicotinate and nicotinamide metabolism SBML MML
lfe00770 Pantothenate and CoA biosynthesis SBML MML
lfe00790 Folate biosynthesis SBML MML
lfe00900 Terpenoid backbone biosynthesis SBML MML
lfe00910 Nitrogen metabolism SBML MML
lfe00920 Sulfur metabolism SBML MML
lfe00930 Caprolactam degradation SBML MML
lfe00960 (Undocumented) SBML MML
lfe00970 Aminoacyl-tRNA biosynthesis SBML MML
lfe00982 (Undocumented) SBML MML
lfe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.