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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lip: Lawsonia intracellularis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lip00010 Glycolysis / Gluconeogenesis SBML MML
lip00020 Citrate cycle (TCA cycle) SBML MML
lip00030 Pentose phosphate pathway SBML MML
lip00040 Pentose and glucuronate interconversions SBML MML
lip00051 Fructose and mannose metabolism SBML MML
lip00052 Galactose metabolism SBML MML
lip00061 Fatty acid biosynthesis SBML MML
lip00100 (Undocumented) SBML MML
lip00120 (Undocumented) SBML MML
lip00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lip00220 (Undocumented) SBML MML
lip00230 Purine metabolism SBML MML
lip00240 Pyrimidine metabolism SBML MML
lip00251 (Undocumented) SBML MML
lip00252 (Undocumented) SBML MML
lip00260 Glycine, serine and threonine metabolism SBML MML
lip00271 (Undocumented) SBML MML
lip00272 (Undocumented) SBML MML
lip00280 Valine, leucine and isoleucine degradation SBML MML
lip00290 Valine, leucine and isoleucine biosynthesis SBML MML
lip00300 Lysine biosynthesis SBML MML
lip00330 Arginine and proline metabolism SBML MML
lip00340 Histidine metabolism SBML MML
lip00350 Tyrosine metabolism SBML MML
lip00360 Phenylalanine metabolism SBML MML
lip00380 Tryptophan metabolism SBML MML
lip00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lip00430 Taurine and hypotaurine metabolism SBML MML
lip00450 Selenoamino acid metabolism SBML MML
lip00471 D-Glutamine and D-glutamate metabolism SBML MML
lip00473 D-Alanine metabolism SBML MML
lip00500 Starch and sucrose metabolism SBML MML
lip00520 Amino sugar and nucleotide sugar metabolism SBML MML
lip00521 Streptomycin biosynthesis SBML MML
lip00523 Polyketide sugar unit biosynthesis SBML MML
lip00530 (Undocumented) SBML MML
lip00540 Lipopolysaccharide biosynthesis SBML MML
lip00550 Peptidoglycan biosynthesis SBML MML
lip00561 Glycerolipid metabolism SBML MML
lip00564 Glycerophospholipid metabolism SBML MML
lip00620 Pyruvate metabolism SBML MML
lip00630 Glyoxylate and dicarboxylate metabolism SBML MML
lip00640 Propanoate metabolism SBML MML
lip00650 Butanoate metabolism SBML MML
lip00670 One carbon pool by folate SBML MML
lip00680 Methane metabolism SBML MML
lip00710 (Undocumented) SBML MML
lip00720 (Undocumented) SBML MML
lip00730 Thiamine metabolism SBML MML
lip00740 Riboflavin metabolism SBML MML
lip00760 Nicotinate and nicotinamide metabolism SBML MML
lip00770 Pantothenate and CoA biosynthesis SBML MML
lip00780 Biotin metabolism SBML MML
lip00790 Folate biosynthesis SBML MML
lip00860 Porphyrin and chlorophyll metabolism SBML MML
lip00900 Terpenoid backbone biosynthesis SBML MML
lip00910 Nitrogen metabolism SBML MML
lip00970 Aminoacyl-tRNA biosynthesis SBML MML
lip00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.