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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism lmf: Listeria monocytogenes F2365

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
lmf00010 Glycolysis / Gluconeogenesis SBML MML
lmf00020 Citrate cycle (TCA cycle) SBML MML
lmf00030 Pentose phosphate pathway SBML MML
lmf00031 (Undocumented) SBML MML
lmf00040 Pentose and glucuronate interconversions SBML MML
lmf00051 Fructose and mannose metabolism SBML MML
lmf00052 Galactose metabolism SBML MML
lmf00061 Fatty acid biosynthesis SBML MML
lmf00071 Fatty acid metabolism SBML MML
lmf00072 Synthesis and degradation of ketone bodies SBML MML
lmf00100 (Undocumented) SBML MML
lmf00120 (Undocumented) SBML MML
lmf00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
lmf00220 (Undocumented) SBML MML
lmf00230 Purine metabolism SBML MML
lmf00240 Pyrimidine metabolism SBML MML
lmf00251 (Undocumented) SBML MML
lmf00252 (Undocumented) SBML MML
lmf00260 Glycine, serine and threonine metabolism SBML MML
lmf00271 (Undocumented) SBML MML
lmf00272 (Undocumented) SBML MML
lmf00280 Valine, leucine and isoleucine degradation SBML MML
lmf00290 Valine, leucine and isoleucine biosynthesis SBML MML
lmf00300 Lysine biosynthesis SBML MML
lmf00310 Lysine degradation SBML MML
lmf00330 Arginine and proline metabolism SBML MML
lmf00340 Histidine metabolism SBML MML
lmf00350 Tyrosine metabolism SBML MML
lmf00360 Phenylalanine metabolism SBML MML
lmf00361 gamma-Hexachlorocyclohexane degradation SBML MML
lmf00380 Tryptophan metabolism SBML MML
lmf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
lmf00401 Novobiocin biosynthesis SBML MML
lmf00410 beta-Alanine metabolism SBML MML
lmf00430 Taurine and hypotaurine metabolism SBML MML
lmf00440 Phosphonate and phosphinate metabolism SBML MML
lmf00450 Selenoamino acid metabolism SBML MML
lmf00460 (Undocumented) SBML MML
lmf00471 D-Glutamine and D-glutamate metabolism SBML MML
lmf00472 D-Arginine and D-ornithine metabolism SBML MML
lmf00473 D-Alanine metabolism SBML MML
lmf00480 Glutathione metabolism SBML MML
lmf00500 Starch and sucrose metabolism SBML MML
lmf00520 Amino sugar and nucleotide sugar metabolism SBML MML
lmf00521 Streptomycin biosynthesis SBML MML
lmf00530 (Undocumented) SBML MML
lmf00550 Peptidoglycan biosynthesis SBML MML
lmf00561 Glycerolipid metabolism SBML MML
lmf00562 Inositol phosphate metabolism SBML MML
lmf00564 Glycerophospholipid metabolism SBML MML
lmf00590 Arachidonic acid metabolism SBML MML
lmf00620 Pyruvate metabolism SBML MML
lmf00624 1- and 2-Methylnaphthalene degradation SBML MML
lmf00626 Naphthalene and anthracene degradation SBML MML
lmf00630 Glyoxylate and dicarboxylate metabolism SBML MML
lmf00632 (Undocumented) SBML MML
lmf00640 Propanoate metabolism SBML MML
lmf00641 3-Chloroacrylic acid degradation SBML MML
lmf00650 Butanoate metabolism SBML MML
lmf00660 C5-Branched dibasic acid metabolism SBML MML
lmf00670 One carbon pool by folate SBML MML
lmf00680 Methane metabolism SBML MML
lmf00710 (Undocumented) SBML MML
lmf00720 (Undocumented) SBML MML
lmf00730 Thiamine metabolism SBML MML
lmf00740 Riboflavin metabolism SBML MML
lmf00750 Vitamin B6 metabolism SBML MML
lmf00760 Nicotinate and nicotinamide metabolism SBML MML
lmf00770 Pantothenate and CoA biosynthesis SBML MML
lmf00780 Biotin metabolism SBML MML
lmf00785 Lipoic acid metabolism SBML MML
lmf00790 Folate biosynthesis SBML MML
lmf00860 Porphyrin and chlorophyll metabolism SBML MML
lmf00900 Terpenoid backbone biosynthesis SBML MML
lmf00903 (Undocumented) SBML MML
lmf00910 Nitrogen metabolism SBML MML
lmf00920 Sulfur metabolism SBML MML
lmf00950 (Undocumented) SBML MML
lmf00960 (Undocumented) SBML MML
lmf00970 Aminoacyl-tRNA biosynthesis SBML MML
lmf00982 (Undocumented) SBML MML
lmf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.