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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mae: Methanococcus aeolicus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mae00010 Glycolysis / Gluconeogenesis SBML MML
mae00020 Citrate cycle (TCA cycle) SBML MML
mae00030 Pentose phosphate pathway SBML MML
mae00040 Pentose and glucuronate interconversions SBML MML
mae00051 Fructose and mannose metabolism SBML MML
mae00052 Galactose metabolism SBML MML
mae00071 Fatty acid metabolism SBML MML
mae00100 (Undocumented) SBML MML
mae00120 (Undocumented) SBML MML
mae00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mae00220 (Undocumented) SBML MML
mae00230 Purine metabolism SBML MML
mae00240 Pyrimidine metabolism SBML MML
mae00251 (Undocumented) SBML MML
mae00252 (Undocumented) SBML MML
mae00260 Glycine, serine and threonine metabolism SBML MML
mae00271 (Undocumented) SBML MML
mae00272 (Undocumented) SBML MML
mae00280 Valine, leucine and isoleucine degradation SBML MML
mae00281 Geraniol degradation SBML MML
mae00290 Valine, leucine and isoleucine biosynthesis SBML MML
mae00300 Lysine biosynthesis SBML MML
mae00330 Arginine and proline metabolism SBML MML
mae00340 Histidine metabolism SBML MML
mae00350 Tyrosine metabolism SBML MML
mae00360 Phenylalanine metabolism SBML MML
mae00361 gamma-Hexachlorocyclohexane degradation SBML MML
mae00362 (Undocumented) SBML MML
mae00380 Tryptophan metabolism SBML MML
mae00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mae00401 Novobiocin biosynthesis SBML MML
mae00450 Selenoamino acid metabolism SBML MML
mae00460 (Undocumented) SBML MML
mae00500 Starch and sucrose metabolism SBML MML
mae00510 (Undocumented) SBML MML
mae00520 Amino sugar and nucleotide sugar metabolism SBML MML
mae00521 Streptomycin biosynthesis SBML MML
mae00523 Polyketide sugar unit biosynthesis SBML MML
mae00530 (Undocumented) SBML MML
mae00550 Peptidoglycan biosynthesis SBML MML
mae00564 Glycerophospholipid metabolism SBML MML
mae00592 alpha-Linolenic acid metabolism SBML MML
mae00620 Pyruvate metabolism SBML MML
mae00624 1- and 2-Methylnaphthalene degradation SBML MML
mae00625 (Undocumented) SBML MML
mae00630 Glyoxylate and dicarboxylate metabolism SBML MML
mae00632 (Undocumented) SBML MML
mae00640 Propanoate metabolism SBML MML
mae00642 Ethylbenzene degradation SBML MML
mae00650 Butanoate metabolism SBML MML
mae00660 C5-Branched dibasic acid metabolism SBML MML
mae00670 One carbon pool by folate SBML MML
mae00680 Methane metabolism SBML MML
mae00710 (Undocumented) SBML MML
mae00720 (Undocumented) SBML MML
mae00730 Thiamine metabolism SBML MML
mae00740 Riboflavin metabolism SBML MML
mae00750 Vitamin B6 metabolism SBML MML
mae00760 Nicotinate and nicotinamide metabolism SBML MML
mae00770 Pantothenate and CoA biosynthesis SBML MML
mae00780 Biotin metabolism SBML MML
mae00790 Folate biosynthesis SBML MML
mae00860 Porphyrin and chlorophyll metabolism SBML MML
mae00900 Terpenoid backbone biosynthesis SBML MML
mae00903 (Undocumented) SBML MML
mae00910 Nitrogen metabolism SBML MML
mae00950 (Undocumented) SBML MML
mae00960 (Undocumented) SBML MML
mae00970 Aminoacyl-tRNA biosynthesis SBML MML
mae00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.