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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mag: Magnetospirillum magneticum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mag00010 Glycolysis / Gluconeogenesis SBML MML
mag00020 Citrate cycle (TCA cycle) SBML MML
mag00030 Pentose phosphate pathway SBML MML
mag00040 Pentose and glucuronate interconversions SBML MML
mag00051 Fructose and mannose metabolism SBML MML
mag00052 Galactose metabolism SBML MML
mag00053 Ascorbate and aldarate metabolism SBML MML
mag00061 Fatty acid biosynthesis SBML MML
mag00062 Fatty acid elongation in mitochondria SBML MML
mag00071 Fatty acid metabolism SBML MML
mag00072 Synthesis and degradation of ketone bodies SBML MML
mag00100 (Undocumented) SBML MML
mag00120 (Undocumented) SBML MML
mag00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mag00220 (Undocumented) SBML MML
mag00230 Purine metabolism SBML MML
mag00240 Pyrimidine metabolism SBML MML
mag00251 (Undocumented) SBML MML
mag00252 (Undocumented) SBML MML
mag00260 Glycine, serine and threonine metabolism SBML MML
mag00271 (Undocumented) SBML MML
mag00272 (Undocumented) SBML MML
mag00280 Valine, leucine and isoleucine degradation SBML MML
mag00281 Geraniol degradation SBML MML
mag00290 Valine, leucine and isoleucine biosynthesis SBML MML
mag00300 Lysine biosynthesis SBML MML
mag00310 Lysine degradation SBML MML
mag00330 Arginine and proline metabolism SBML MML
mag00340 Histidine metabolism SBML MML
mag00350 Tyrosine metabolism SBML MML
mag00360 Phenylalanine metabolism SBML MML
mag00361 gamma-Hexachlorocyclohexane degradation SBML MML
mag00362 (Undocumented) SBML MML
mag00364 Fluorobenzoate degradation SBML MML
mag00380 Tryptophan metabolism SBML MML
mag00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mag00401 Novobiocin biosynthesis SBML MML
mag00410 beta-Alanine metabolism SBML MML
mag00430 Taurine and hypotaurine metabolism SBML MML
mag00450 Selenoamino acid metabolism SBML MML
mag00460 (Undocumented) SBML MML
mag00471 D-Glutamine and D-glutamate metabolism SBML MML
mag00473 D-Alanine metabolism SBML MML
mag00480 Glutathione metabolism SBML MML
mag00500 Starch and sucrose metabolism SBML MML
mag00520 Amino sugar and nucleotide sugar metabolism SBML MML
mag00521 Streptomycin biosynthesis SBML MML
mag00523 Polyketide sugar unit biosynthesis SBML MML
mag00530 (Undocumented) SBML MML
mag00540 Lipopolysaccharide biosynthesis SBML MML
mag00550 Peptidoglycan biosynthesis SBML MML
mag00561 Glycerolipid metabolism SBML MML
mag00562 Inositol phosphate metabolism SBML MML
mag00564 Glycerophospholipid metabolism SBML MML
mag00590 Arachidonic acid metabolism SBML MML
mag00592 alpha-Linolenic acid metabolism SBML MML
mag00600 Sphingolipid metabolism SBML MML
mag00620 Pyruvate metabolism SBML MML
mag00623 2,4-Dichlorobenzoate degradation SBML MML
mag00624 1- and 2-Methylnaphthalene degradation SBML MML
mag00627 1,4-Dichlorobenzene degradation SBML MML
mag00630 Glyoxylate and dicarboxylate metabolism SBML MML
mag00632 (Undocumented) SBML MML
mag00633 Trinitrotoluene degradation SBML MML
mag00640 Propanoate metabolism SBML MML
mag00642 Ethylbenzene degradation SBML MML
mag00643 Styrene degradation SBML MML
mag00650 Butanoate metabolism SBML MML
mag00660 C5-Branched dibasic acid metabolism SBML MML
mag00670 One carbon pool by folate SBML MML
mag00680 Methane metabolism SBML MML
mag00710 (Undocumented) SBML MML
mag00720 (Undocumented) SBML MML
mag00730 Thiamine metabolism SBML MML
mag00740 Riboflavin metabolism SBML MML
mag00750 Vitamin B6 metabolism SBML MML
mag00760 Nicotinate and nicotinamide metabolism SBML MML
mag00770 Pantothenate and CoA biosynthesis SBML MML
mag00780 Biotin metabolism SBML MML
mag00785 Lipoic acid metabolism SBML MML
mag00790 Folate biosynthesis SBML MML
mag00860 Porphyrin and chlorophyll metabolism SBML MML
mag00900 Terpenoid backbone biosynthesis SBML MML
mag00903 (Undocumented) SBML MML
mag00910 Nitrogen metabolism SBML MML
mag00920 Sulfur metabolism SBML MML
mag00930 Caprolactam degradation SBML MML
mag00941 (Undocumented) SBML MML
mag00960 (Undocumented) SBML MML
mag00970 Aminoacyl-tRNA biosynthesis SBML MML
mag00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mag00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.