This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mba: Methanosarcina barkeri

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mba00010 Glycolysis / Gluconeogenesis SBML MML
mba00020 Citrate cycle (TCA cycle) SBML MML
mba00030 Pentose phosphate pathway SBML MML
mba00031 (Undocumented) SBML MML
mba00040 Pentose and glucuronate interconversions SBML MML
mba00051 Fructose and mannose metabolism SBML MML
mba00052 Galactose metabolism SBML MML
mba00053 Ascorbate and aldarate metabolism SBML MML
mba00061 Fatty acid biosynthesis SBML MML
mba00071 Fatty acid metabolism SBML MML
mba00100 (Undocumented) SBML MML
mba00120 (Undocumented) SBML MML
mba00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mba00150 Androgen and estrogen metabolism SBML MML
mba00220 (Undocumented) SBML MML
mba00230 Purine metabolism SBML MML
mba00240 Pyrimidine metabolism SBML MML
mba00251 (Undocumented) SBML MML
mba00252 (Undocumented) SBML MML
mba00260 Glycine, serine and threonine metabolism SBML MML
mba00271 (Undocumented) SBML MML
mba00272 (Undocumented) SBML MML
mba00280 Valine, leucine and isoleucine degradation SBML MML
mba00281 Geraniol degradation SBML MML
mba00290 Valine, leucine and isoleucine biosynthesis SBML MML
mba00300 Lysine biosynthesis SBML MML
mba00310 Lysine degradation SBML MML
mba00330 Arginine and proline metabolism SBML MML
mba00340 Histidine metabolism SBML MML
mba00350 Tyrosine metabolism SBML MML
mba00360 Phenylalanine metabolism SBML MML
mba00362 (Undocumented) SBML MML
mba00380 Tryptophan metabolism SBML MML
mba00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mba00401 Novobiocin biosynthesis SBML MML
mba00410 beta-Alanine metabolism SBML MML
mba00430 Taurine and hypotaurine metabolism SBML MML
mba00450 Selenoamino acid metabolism SBML MML
mba00460 (Undocumented) SBML MML
mba00480 Glutathione metabolism SBML MML
mba00500 Starch and sucrose metabolism SBML MML
mba00510 (Undocumented) SBML MML
mba00520 Amino sugar and nucleotide sugar metabolism SBML MML
mba00521 Streptomycin biosynthesis SBML MML
mba00523 Polyketide sugar unit biosynthesis SBML MML
mba00530 (Undocumented) SBML MML
mba00550 Peptidoglycan biosynthesis SBML MML
mba00561 Glycerolipid metabolism SBML MML
mba00562 Inositol phosphate metabolism SBML MML
mba00564 Glycerophospholipid metabolism SBML MML
mba00592 alpha-Linolenic acid metabolism SBML MML
mba00620 Pyruvate metabolism SBML MML
mba00624 1- and 2-Methylnaphthalene degradation SBML MML
mba00625 (Undocumented) SBML MML
mba00630 Glyoxylate and dicarboxylate metabolism SBML MML
mba00632 (Undocumented) SBML MML
mba00640 Propanoate metabolism SBML MML
mba00641 3-Chloroacrylic acid degradation SBML MML
mba00642 Ethylbenzene degradation SBML MML
mba00650 Butanoate metabolism SBML MML
mba00660 C5-Branched dibasic acid metabolism SBML MML
mba00670 One carbon pool by folate SBML MML
mba00680 Methane metabolism SBML MML
mba00710 (Undocumented) SBML MML
mba00720 (Undocumented) SBML MML
mba00730 Thiamine metabolism SBML MML
mba00740 Riboflavin metabolism SBML MML
mba00750 Vitamin B6 metabolism SBML MML
mba00760 Nicotinate and nicotinamide metabolism SBML MML
mba00770 Pantothenate and CoA biosynthesis SBML MML
mba00780 Biotin metabolism SBML MML
mba00790 Folate biosynthesis SBML MML
mba00860 Porphyrin and chlorophyll metabolism SBML MML
mba00900 Terpenoid backbone biosynthesis SBML MML
mba00903 (Undocumented) SBML MML
mba00910 Nitrogen metabolism SBML MML
mba00920 Sulfur metabolism SBML MML
mba00940 (Undocumented) SBML MML
mba00950 (Undocumented) SBML MML
mba00960 (Undocumented) SBML MML
mba00970 Aminoacyl-tRNA biosynthesis SBML MML
mba00982 (Undocumented) SBML MML
mba00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.