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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mbr: Monosiga brevicollis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mbr00010 Glycolysis / Gluconeogenesis SBML MML
mbr00020 Citrate cycle (TCA cycle) SBML MML
mbr00030 Pentose phosphate pathway SBML MML
mbr00031 (Undocumented) SBML MML
mbr00040 Pentose and glucuronate interconversions SBML MML
mbr00051 Fructose and mannose metabolism SBML MML
mbr00052 Galactose metabolism SBML MML
mbr00053 Ascorbate and aldarate metabolism SBML MML
mbr00061 Fatty acid biosynthesis SBML MML
mbr00062 Fatty acid elongation in mitochondria SBML MML
mbr00071 Fatty acid metabolism SBML MML
mbr00072 Synthesis and degradation of ketone bodies SBML MML
mbr00100 (Undocumented) SBML MML
mbr00120 (Undocumented) SBML MML
mbr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mbr00140 (Undocumented) SBML MML
mbr00150 Androgen and estrogen metabolism SBML MML
mbr00220 (Undocumented) SBML MML
mbr00230 Purine metabolism SBML MML
mbr00240 Pyrimidine metabolism SBML MML
mbr00251 (Undocumented) SBML MML
mbr00252 (Undocumented) SBML MML
mbr00260 Glycine, serine and threonine metabolism SBML MML
mbr00271 (Undocumented) SBML MML
mbr00272 (Undocumented) SBML MML
mbr00280 Valine, leucine and isoleucine degradation SBML MML
mbr00281 Geraniol degradation SBML MML
mbr00290 Valine, leucine and isoleucine biosynthesis SBML MML
mbr00300 Lysine biosynthesis SBML MML
mbr00310 Lysine degradation SBML MML
mbr00330 Arginine and proline metabolism SBML MML
mbr00340 Histidine metabolism SBML MML
mbr00350 Tyrosine metabolism SBML MML
mbr00360 Phenylalanine metabolism SBML MML
mbr00361 gamma-Hexachlorocyclohexane degradation SBML MML
mbr00362 (Undocumented) SBML MML
mbr00363 Bisphenol A degradation SBML MML
mbr00380 Tryptophan metabolism SBML MML
mbr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mbr00401 Novobiocin biosynthesis SBML MML
mbr00410 beta-Alanine metabolism SBML MML
mbr00430 Taurine and hypotaurine metabolism SBML MML
mbr00440 Phosphonate and phosphinate metabolism SBML MML
mbr00450 Selenoamino acid metabolism SBML MML
mbr00460 (Undocumented) SBML MML
mbr00471 D-Glutamine and D-glutamate metabolism SBML MML
mbr00472 D-Arginine and D-ornithine metabolism SBML MML
mbr00480 Glutathione metabolism SBML MML
mbr00500 Starch and sucrose metabolism SBML MML
mbr00510 (Undocumented) SBML MML
mbr00520 Amino sugar and nucleotide sugar metabolism SBML MML
mbr00521 Streptomycin biosynthesis SBML MML
mbr00530 (Undocumented) SBML MML
mbr00550 Peptidoglycan biosynthesis SBML MML
mbr00561 Glycerolipid metabolism SBML MML
mbr00562 Inositol phosphate metabolism SBML MML
mbr00564 Glycerophospholipid metabolism SBML MML
mbr00565 Ether lipid metabolism SBML MML
mbr00590 Arachidonic acid metabolism SBML MML
mbr00592 alpha-Linolenic acid metabolism SBML MML
mbr00600 Sphingolipid metabolism SBML MML
mbr00620 Pyruvate metabolism SBML MML
mbr00624 1- and 2-Methylnaphthalene degradation SBML MML
mbr00626 Naphthalene and anthracene degradation SBML MML
mbr00630 Glyoxylate and dicarboxylate metabolism SBML MML
mbr00632 (Undocumented) SBML MML
mbr00640 Propanoate metabolism SBML MML
mbr00641 3-Chloroacrylic acid degradation SBML MML
mbr00643 Styrene degradation SBML MML
mbr00650 Butanoate metabolism SBML MML
mbr00670 One carbon pool by folate SBML MML
mbr00680 Methane metabolism SBML MML
mbr00710 (Undocumented) SBML MML
mbr00720 (Undocumented) SBML MML
mbr00730 Thiamine metabolism SBML MML
mbr00740 Riboflavin metabolism SBML MML
mbr00750 Vitamin B6 metabolism SBML MML
mbr00760 Nicotinate and nicotinamide metabolism SBML MML
mbr00770 Pantothenate and CoA biosynthesis SBML MML
mbr00790 Folate biosynthesis SBML MML
mbr00860 Porphyrin and chlorophyll metabolism SBML MML
mbr00900 Terpenoid backbone biosynthesis SBML MML
mbr00903 (Undocumented) SBML MML
mbr00910 Nitrogen metabolism SBML MML
mbr00920 Sulfur metabolism SBML MML
mbr00930 Caprolactam degradation SBML MML
mbr00940 (Undocumented) SBML MML
mbr00941 (Undocumented) SBML MML
mbr00950 (Undocumented) SBML MML
mbr00960 (Undocumented) SBML MML
mbr00970 Aminoacyl-tRNA biosynthesis SBML MML
mbr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mbr00982 (Undocumented) SBML MML
mbr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.