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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mca: Methylococcus capsulatus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mca00010 Glycolysis / Gluconeogenesis SBML MML
mca00020 Citrate cycle (TCA cycle) SBML MML
mca00030 Pentose phosphate pathway SBML MML
mca00040 Pentose and glucuronate interconversions SBML MML
mca00051 Fructose and mannose metabolism SBML MML
mca00052 Galactose metabolism SBML MML
mca00061 Fatty acid biosynthesis SBML MML
mca00071 Fatty acid metabolism SBML MML
mca00100 (Undocumented) SBML MML
mca00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mca00220 (Undocumented) SBML MML
mca00230 Purine metabolism SBML MML
mca00240 Pyrimidine metabolism SBML MML
mca00251 (Undocumented) SBML MML
mca00252 (Undocumented) SBML MML
mca00260 Glycine, serine and threonine metabolism SBML MML
mca00271 (Undocumented) SBML MML
mca00272 (Undocumented) SBML MML
mca00280 Valine, leucine and isoleucine degradation SBML MML
mca00290 Valine, leucine and isoleucine biosynthesis SBML MML
mca00300 Lysine biosynthesis SBML MML
mca00310 Lysine degradation SBML MML
mca00311 Penicillin and cephalosporin biosynthesis SBML MML
mca00330 Arginine and proline metabolism SBML MML
mca00340 Histidine metabolism SBML MML
mca00350 Tyrosine metabolism SBML MML
mca00360 Phenylalanine metabolism SBML MML
mca00361 gamma-Hexachlorocyclohexane degradation SBML MML
mca00380 Tryptophan metabolism SBML MML
mca00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mca00401 Novobiocin biosynthesis SBML MML
mca00410 beta-Alanine metabolism SBML MML
mca00430 Taurine and hypotaurine metabolism SBML MML
mca00450 Selenoamino acid metabolism SBML MML
mca00460 (Undocumented) SBML MML
mca00471 D-Glutamine and D-glutamate metabolism SBML MML
mca00472 D-Arginine and D-ornithine metabolism SBML MML
mca00473 D-Alanine metabolism SBML MML
mca00480 Glutathione metabolism SBML MML
mca00500 Starch and sucrose metabolism SBML MML
mca00520 Amino sugar and nucleotide sugar metabolism SBML MML
mca00521 Streptomycin biosynthesis SBML MML
mca00523 Polyketide sugar unit biosynthesis SBML MML
mca00530 (Undocumented) SBML MML
mca00540 Lipopolysaccharide biosynthesis SBML MML
mca00550 Peptidoglycan biosynthesis SBML MML
mca00561 Glycerolipid metabolism SBML MML
mca00562 Inositol phosphate metabolism SBML MML
mca00564 Glycerophospholipid metabolism SBML MML
mca00590 Arachidonic acid metabolism SBML MML
mca00620 Pyruvate metabolism SBML MML
mca00624 1- and 2-Methylnaphthalene degradation SBML MML
mca00626 Naphthalene and anthracene degradation SBML MML
mca00630 Glyoxylate and dicarboxylate metabolism SBML MML
mca00632 (Undocumented) SBML MML
mca00633 Trinitrotoluene degradation SBML MML
mca00640 Propanoate metabolism SBML MML
mca00641 3-Chloroacrylic acid degradation SBML MML
mca00650 Butanoate metabolism SBML MML
mca00660 C5-Branched dibasic acid metabolism SBML MML
mca00670 One carbon pool by folate SBML MML
mca00680 Methane metabolism SBML MML
mca00710 (Undocumented) SBML MML
mca00720 (Undocumented) SBML MML
mca00730 Thiamine metabolism SBML MML
mca00740 Riboflavin metabolism SBML MML
mca00750 Vitamin B6 metabolism SBML MML
mca00760 Nicotinate and nicotinamide metabolism SBML MML
mca00770 Pantothenate and CoA biosynthesis SBML MML
mca00780 Biotin metabolism SBML MML
mca00785 Lipoic acid metabolism SBML MML
mca00790 Folate biosynthesis SBML MML
mca00860 Porphyrin and chlorophyll metabolism SBML MML
mca00900 Terpenoid backbone biosynthesis SBML MML
mca00903 (Undocumented) SBML MML
mca00910 Nitrogen metabolism SBML MML
mca00920 Sulfur metabolism SBML MML
mca00940 (Undocumented) SBML MML
mca00941 (Undocumented) SBML MML
mca00950 (Undocumented) SBML MML
mca00970 Aminoacyl-tRNA biosynthesis SBML MML
mca00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mca00982 (Undocumented) SBML MML
mca00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.