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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mex: Methylobacterium extorquens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mex00010 Glycolysis / Gluconeogenesis SBML MML
mex00020 Citrate cycle (TCA cycle) SBML MML
mex00030 Pentose phosphate pathway SBML MML
mex00031 (Undocumented) SBML MML
mex00040 Pentose and glucuronate interconversions SBML MML
mex00051 Fructose and mannose metabolism SBML MML
mex00052 Galactose metabolism SBML MML
mex00053 Ascorbate and aldarate metabolism SBML MML
mex00061 Fatty acid biosynthesis SBML MML
mex00071 Fatty acid metabolism SBML MML
mex00072 Synthesis and degradation of ketone bodies SBML MML
mex00100 (Undocumented) SBML MML
mex00120 (Undocumented) SBML MML
mex00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mex00150 Androgen and estrogen metabolism SBML MML
mex00220 (Undocumented) SBML MML
mex00230 Purine metabolism SBML MML
mex00240 Pyrimidine metabolism SBML MML
mex00251 (Undocumented) SBML MML
mex00252 (Undocumented) SBML MML
mex00260 Glycine, serine and threonine metabolism SBML MML
mex00271 (Undocumented) SBML MML
mex00272 (Undocumented) SBML MML
mex00280 Valine, leucine and isoleucine degradation SBML MML
mex00281 Geraniol degradation SBML MML
mex00290 Valine, leucine and isoleucine biosynthesis SBML MML
mex00300 Lysine biosynthesis SBML MML
mex00310 Lysine degradation SBML MML
mex00330 Arginine and proline metabolism SBML MML
mex00340 Histidine metabolism SBML MML
mex00350 Tyrosine metabolism SBML MML
mex00360 Phenylalanine metabolism SBML MML
mex00361 gamma-Hexachlorocyclohexane degradation SBML MML
mex00362 (Undocumented) SBML MML
mex00363 Bisphenol A degradation SBML MML
mex00364 Fluorobenzoate degradation SBML MML
mex00380 Tryptophan metabolism SBML MML
mex00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mex00401 Novobiocin biosynthesis SBML MML
mex00410 beta-Alanine metabolism SBML MML
mex00430 Taurine and hypotaurine metabolism SBML MML
mex00440 Phosphonate and phosphinate metabolism SBML MML
mex00450 Selenoamino acid metabolism SBML MML
mex00460 (Undocumented) SBML MML
mex00471 D-Glutamine and D-glutamate metabolism SBML MML
mex00472 D-Arginine and D-ornithine metabolism SBML MML
mex00473 D-Alanine metabolism SBML MML
mex00480 Glutathione metabolism SBML MML
mex00500 Starch and sucrose metabolism SBML MML
mex00520 Amino sugar and nucleotide sugar metabolism SBML MML
mex00521 Streptomycin biosynthesis SBML MML
mex00523 Polyketide sugar unit biosynthesis SBML MML
mex00530 (Undocumented) SBML MML
mex00540 Lipopolysaccharide biosynthesis SBML MML
mex00550 Peptidoglycan biosynthesis SBML MML
mex00561 Glycerolipid metabolism SBML MML
mex00562 Inositol phosphate metabolism SBML MML
mex00564 Glycerophospholipid metabolism SBML MML
mex00590 Arachidonic acid metabolism SBML MML
mex00592 alpha-Linolenic acid metabolism SBML MML
mex00600 Sphingolipid metabolism SBML MML
mex00620 Pyruvate metabolism SBML MML
mex00622 Toluene and xylene degradation SBML MML
mex00623 2,4-Dichlorobenzoate degradation SBML MML
mex00624 1- and 2-Methylnaphthalene degradation SBML MML
mex00626 Naphthalene and anthracene degradation SBML MML
mex00627 1,4-Dichlorobenzene degradation SBML MML
mex00628 Fluorene degradation SBML MML
mex00630 Glyoxylate and dicarboxylate metabolism SBML MML
mex00631 1,2-Dichloroethane degradation SBML MML
mex00632 (Undocumented) SBML MML
mex00640 Propanoate metabolism SBML MML
mex00641 3-Chloroacrylic acid degradation SBML MML
mex00642 Ethylbenzene degradation SBML MML
mex00643 Styrene degradation SBML MML
mex00650 Butanoate metabolism SBML MML
mex00660 C5-Branched dibasic acid metabolism SBML MML
mex00670 One carbon pool by folate SBML MML
mex00680 Methane metabolism SBML MML
mex00710 (Undocumented) SBML MML
mex00720 (Undocumented) SBML MML
mex00730 Thiamine metabolism SBML MML
mex00740 Riboflavin metabolism SBML MML
mex00750 Vitamin B6 metabolism SBML MML
mex00760 Nicotinate and nicotinamide metabolism SBML MML
mex00770 Pantothenate and CoA biosynthesis SBML MML
mex00780 Biotin metabolism SBML MML
mex00785 Lipoic acid metabolism SBML MML
mex00790 Folate biosynthesis SBML MML
mex00791 Atrazine degradation SBML MML
mex00860 Porphyrin and chlorophyll metabolism SBML MML
mex00900 Terpenoid backbone biosynthesis SBML MML
mex00903 (Undocumented) SBML MML
mex00906 Carotenoid biosynthesis SBML MML
mex00910 Nitrogen metabolism SBML MML
mex00920 Sulfur metabolism SBML MML
mex00930 Caprolactam degradation SBML MML
mex00940 (Undocumented) SBML MML
mex00941 (Undocumented) SBML MML
mex00960 (Undocumented) SBML MML
mex00970 Aminoacyl-tRNA biosynthesis SBML MML
mex00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mex00982 (Undocumented) SBML MML
mex00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.