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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mfa: Methylobacillus flagellatus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mfa00010 Glycolysis / Gluconeogenesis SBML MML
mfa00020 Citrate cycle (TCA cycle) SBML MML
mfa00030 Pentose phosphate pathway SBML MML
mfa00040 Pentose and glucuronate interconversions SBML MML
mfa00051 Fructose and mannose metabolism SBML MML
mfa00052 Galactose metabolism SBML MML
mfa00061 Fatty acid biosynthesis SBML MML
mfa00071 Fatty acid metabolism SBML MML
mfa00100 (Undocumented) SBML MML
mfa00120 (Undocumented) SBML MML
mfa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mfa00150 Androgen and estrogen metabolism SBML MML
mfa00220 (Undocumented) SBML MML
mfa00230 Purine metabolism SBML MML
mfa00240 Pyrimidine metabolism SBML MML
mfa00251 (Undocumented) SBML MML
mfa00252 (Undocumented) SBML MML
mfa00260 Glycine, serine and threonine metabolism SBML MML
mfa00271 (Undocumented) SBML MML
mfa00272 (Undocumented) SBML MML
mfa00280 Valine, leucine and isoleucine degradation SBML MML
mfa00281 Geraniol degradation SBML MML
mfa00290 Valine, leucine and isoleucine biosynthesis SBML MML
mfa00300 Lysine biosynthesis SBML MML
mfa00310 Lysine degradation SBML MML
mfa00330 Arginine and proline metabolism SBML MML
mfa00340 Histidine metabolism SBML MML
mfa00350 Tyrosine metabolism SBML MML
mfa00360 Phenylalanine metabolism SBML MML
mfa00361 gamma-Hexachlorocyclohexane degradation SBML MML
mfa00363 Bisphenol A degradation SBML MML
mfa00364 Fluorobenzoate degradation SBML MML
mfa00380 Tryptophan metabolism SBML MML
mfa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mfa00401 Novobiocin biosynthesis SBML MML
mfa00410 beta-Alanine metabolism SBML MML
mfa00430 Taurine and hypotaurine metabolism SBML MML
mfa00450 Selenoamino acid metabolism SBML MML
mfa00460 (Undocumented) SBML MML
mfa00471 D-Glutamine and D-glutamate metabolism SBML MML
mfa00472 D-Arginine and D-ornithine metabolism SBML MML
mfa00473 D-Alanine metabolism SBML MML
mfa00480 Glutathione metabolism SBML MML
mfa00500 Starch and sucrose metabolism SBML MML
mfa00520 Amino sugar and nucleotide sugar metabolism SBML MML
mfa00521 Streptomycin biosynthesis SBML MML
mfa00523 Polyketide sugar unit biosynthesis SBML MML
mfa00530 (Undocumented) SBML MML
mfa00540 Lipopolysaccharide biosynthesis SBML MML
mfa00550 Peptidoglycan biosynthesis SBML MML
mfa00561 Glycerolipid metabolism SBML MML
mfa00562 Inositol phosphate metabolism SBML MML
mfa00564 Glycerophospholipid metabolism SBML MML
mfa00620 Pyruvate metabolism SBML MML
mfa00622 Toluene and xylene degradation SBML MML
mfa00624 1- and 2-Methylnaphthalene degradation SBML MML
mfa00626 Naphthalene and anthracene degradation SBML MML
mfa00627 1,4-Dichlorobenzene degradation SBML MML
mfa00630 Glyoxylate and dicarboxylate metabolism SBML MML
mfa00632 (Undocumented) SBML MML
mfa00633 Trinitrotoluene degradation SBML MML
mfa00640 Propanoate metabolism SBML MML
mfa00641 3-Chloroacrylic acid degradation SBML MML
mfa00643 Styrene degradation SBML MML
mfa00650 Butanoate metabolism SBML MML
mfa00660 C5-Branched dibasic acid metabolism SBML MML
mfa00670 One carbon pool by folate SBML MML
mfa00680 Methane metabolism SBML MML
mfa00710 (Undocumented) SBML MML
mfa00720 (Undocumented) SBML MML
mfa00730 Thiamine metabolism SBML MML
mfa00740 Riboflavin metabolism SBML MML
mfa00750 Vitamin B6 metabolism SBML MML
mfa00760 Nicotinate and nicotinamide metabolism SBML MML
mfa00770 Pantothenate and CoA biosynthesis SBML MML
mfa00780 Biotin metabolism SBML MML
mfa00785 Lipoic acid metabolism SBML MML
mfa00790 Folate biosynthesis SBML MML
mfa00791 Atrazine degradation SBML MML
mfa00860 Porphyrin and chlorophyll metabolism SBML MML
mfa00900 Terpenoid backbone biosynthesis SBML MML
mfa00903 (Undocumented) SBML MML
mfa00910 Nitrogen metabolism SBML MML
mfa00920 Sulfur metabolism SBML MML
mfa00960 (Undocumented) SBML MML
mfa00970 Aminoacyl-tRNA biosynthesis SBML MML
mfa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mfa00982 (Undocumented) SBML MML
mfa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.