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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mja: Methanococcus jannaschii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mja00010 Glycolysis / Gluconeogenesis SBML MML
mja00020 Citrate cycle (TCA cycle) SBML MML
mja00030 Pentose phosphate pathway SBML MML
mja00040 Pentose and glucuronate interconversions SBML MML
mja00051 Fructose and mannose metabolism SBML MML
mja00052 Galactose metabolism SBML MML
mja00071 Fatty acid metabolism SBML MML
mja00120 (Undocumented) SBML MML
mja00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mja00220 (Undocumented) SBML MML
mja00230 Purine metabolism SBML MML
mja00240 Pyrimidine metabolism SBML MML
mja00251 (Undocumented) SBML MML
mja00252 (Undocumented) SBML MML
mja00260 Glycine, serine and threonine metabolism SBML MML
mja00271 (Undocumented) SBML MML
mja00272 (Undocumented) SBML MML
mja00280 Valine, leucine and isoleucine degradation SBML MML
mja00281 Geraniol degradation SBML MML
mja00290 Valine, leucine and isoleucine biosynthesis SBML MML
mja00300 Lysine biosynthesis SBML MML
mja00330 Arginine and proline metabolism SBML MML
mja00340 Histidine metabolism SBML MML
mja00350 Tyrosine metabolism SBML MML
mja00360 Phenylalanine metabolism SBML MML
mja00362 (Undocumented) SBML MML
mja00380 Tryptophan metabolism SBML MML
mja00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mja00401 Novobiocin biosynthesis SBML MML
mja00450 Selenoamino acid metabolism SBML MML
mja00460 (Undocumented) SBML MML
mja00500 Starch and sucrose metabolism SBML MML
mja00510 (Undocumented) SBML MML
mja00520 Amino sugar and nucleotide sugar metabolism SBML MML
mja00521 Streptomycin biosynthesis SBML MML
mja00530 (Undocumented) SBML MML
mja00550 Peptidoglycan biosynthesis SBML MML
mja00562 Inositol phosphate metabolism SBML MML
mja00564 Glycerophospholipid metabolism SBML MML
mja00592 alpha-Linolenic acid metabolism SBML MML
mja00620 Pyruvate metabolism SBML MML
mja00624 1- and 2-Methylnaphthalene degradation SBML MML
mja00625 (Undocumented) SBML MML
mja00630 Glyoxylate and dicarboxylate metabolism SBML MML
mja00632 (Undocumented) SBML MML
mja00640 Propanoate metabolism SBML MML
mja00650 Butanoate metabolism SBML MML
mja00660 C5-Branched dibasic acid metabolism SBML MML
mja00670 One carbon pool by folate SBML MML
mja00680 Methane metabolism SBML MML
mja00710 (Undocumented) SBML MML
mja00720 (Undocumented) SBML MML
mja00730 Thiamine metabolism SBML MML
mja00740 Riboflavin metabolism SBML MML
mja00750 Vitamin B6 metabolism SBML MML
mja00760 Nicotinate and nicotinamide metabolism SBML MML
mja00770 Pantothenate and CoA biosynthesis SBML MML
mja00780 Biotin metabolism SBML MML
mja00790 Folate biosynthesis SBML MML
mja00860 Porphyrin and chlorophyll metabolism SBML MML
mja00900 Terpenoid backbone biosynthesis SBML MML
mja00910 Nitrogen metabolism SBML MML
mja00950 (Undocumented) SBML MML
mja00970 Aminoacyl-tRNA biosynthesis SBML MML
mja00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.