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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mmc: Mycobacterium sp. MCS

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mmc00010 Glycolysis / Gluconeogenesis SBML MML
mmc00020 Citrate cycle (TCA cycle) SBML MML
mmc00030 Pentose phosphate pathway SBML MML
mmc00031 (Undocumented) SBML MML
mmc00040 Pentose and glucuronate interconversions SBML MML
mmc00051 Fructose and mannose metabolism SBML MML
mmc00052 Galactose metabolism SBML MML
mmc00053 Ascorbate and aldarate metabolism SBML MML
mmc00061 Fatty acid biosynthesis SBML MML
mmc00062 Fatty acid elongation in mitochondria SBML MML
mmc00071 Fatty acid metabolism SBML MML
mmc00072 Synthesis and degradation of ketone bodies SBML MML
mmc00100 (Undocumented) SBML MML
mmc00120 (Undocumented) SBML MML
mmc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mmc00140 (Undocumented) SBML MML
mmc00150 Androgen and estrogen metabolism SBML MML
mmc00220 (Undocumented) SBML MML
mmc00230 Purine metabolism SBML MML
mmc00240 Pyrimidine metabolism SBML MML
mmc00251 (Undocumented) SBML MML
mmc00252 (Undocumented) SBML MML
mmc00260 Glycine, serine and threonine metabolism SBML MML
mmc00271 (Undocumented) SBML MML
mmc00272 (Undocumented) SBML MML
mmc00280 Valine, leucine and isoleucine degradation SBML MML
mmc00281 Geraniol degradation SBML MML
mmc00290 Valine, leucine and isoleucine biosynthesis SBML MML
mmc00300 Lysine biosynthesis SBML MML
mmc00310 Lysine degradation SBML MML
mmc00330 Arginine and proline metabolism SBML MML
mmc00340 Histidine metabolism SBML MML
mmc00350 Tyrosine metabolism SBML MML
mmc00360 Phenylalanine metabolism SBML MML
mmc00361 gamma-Hexachlorocyclohexane degradation SBML MML
mmc00362 (Undocumented) SBML MML
mmc00364 Fluorobenzoate degradation SBML MML
mmc00380 Tryptophan metabolism SBML MML
mmc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mmc00401 Novobiocin biosynthesis SBML MML
mmc00410 beta-Alanine metabolism SBML MML
mmc00430 Taurine and hypotaurine metabolism SBML MML
mmc00440 Phosphonate and phosphinate metabolism SBML MML
mmc00450 Selenoamino acid metabolism SBML MML
mmc00460 (Undocumented) SBML MML
mmc00471 D-Glutamine and D-glutamate metabolism SBML MML
mmc00473 D-Alanine metabolism SBML MML
mmc00480 Glutathione metabolism SBML MML
mmc00500 Starch and sucrose metabolism SBML MML
mmc00510 (Undocumented) SBML MML
mmc00520 Amino sugar and nucleotide sugar metabolism SBML MML
mmc00521 Streptomycin biosynthesis SBML MML
mmc00523 Polyketide sugar unit biosynthesis SBML MML
mmc00530 (Undocumented) SBML MML
mmc00550 Peptidoglycan biosynthesis SBML MML
mmc00561 Glycerolipid metabolism SBML MML
mmc00562 Inositol phosphate metabolism SBML MML
mmc00564 Glycerophospholipid metabolism SBML MML
mmc00565 Ether lipid metabolism SBML MML
mmc00590 Arachidonic acid metabolism SBML MML
mmc00592 alpha-Linolenic acid metabolism SBML MML
mmc00620 Pyruvate metabolism SBML MML
mmc00622 Toluene and xylene degradation SBML MML
mmc00624 1- and 2-Methylnaphthalene degradation SBML MML
mmc00626 Naphthalene and anthracene degradation SBML MML
mmc00627 1,4-Dichlorobenzene degradation SBML MML
mmc00628 Fluorene degradation SBML MML
mmc00629 Carbazole degradation SBML MML
mmc00630 Glyoxylate and dicarboxylate metabolism SBML MML
mmc00631 1,2-Dichloroethane degradation SBML MML
mmc00632 (Undocumented) SBML MML
mmc00640 Propanoate metabolism SBML MML
mmc00641 3-Chloroacrylic acid degradation SBML MML
mmc00642 Ethylbenzene degradation SBML MML
mmc00643 Styrene degradation SBML MML
mmc00650 Butanoate metabolism SBML MML
mmc00660 C5-Branched dibasic acid metabolism SBML MML
mmc00670 One carbon pool by folate SBML MML
mmc00680 Methane metabolism SBML MML
mmc00710 (Undocumented) SBML MML
mmc00720 (Undocumented) SBML MML
mmc00730 Thiamine metabolism SBML MML
mmc00740 Riboflavin metabolism SBML MML
mmc00750 Vitamin B6 metabolism SBML MML
mmc00760 Nicotinate and nicotinamide metabolism SBML MML
mmc00770 Pantothenate and CoA biosynthesis SBML MML
mmc00780 Biotin metabolism SBML MML
mmc00785 Lipoic acid metabolism SBML MML
mmc00790 Folate biosynthesis SBML MML
mmc00791 Atrazine degradation SBML MML
mmc00860 Porphyrin and chlorophyll metabolism SBML MML
mmc00900 Terpenoid backbone biosynthesis SBML MML
mmc00903 (Undocumented) SBML MML
mmc00910 Nitrogen metabolism SBML MML
mmc00920 Sulfur metabolism SBML MML
mmc00930 Caprolactam degradation SBML MML
mmc00941 (Undocumented) SBML MML
mmc00960 (Undocumented) SBML MML
mmc00970 Aminoacyl-tRNA biosynthesis SBML MML
mmc00982 (Undocumented) SBML MML
mmc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.