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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mmx: Methanococcus maripaludis C6

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mmx00010 Glycolysis / Gluconeogenesis SBML MML
mmx00020 Citrate cycle (TCA cycle) SBML MML
mmx00030 Pentose phosphate pathway SBML MML
mmx00040 Pentose and glucuronate interconversions SBML MML
mmx00051 Fructose and mannose metabolism SBML MML
mmx00052 Galactose metabolism SBML MML
mmx00071 Fatty acid metabolism SBML MML
mmx00100 (Undocumented) SBML MML
mmx00120 (Undocumented) SBML MML
mmx00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mmx00220 (Undocumented) SBML MML
mmx00230 Purine metabolism SBML MML
mmx00240 Pyrimidine metabolism SBML MML
mmx00251 (Undocumented) SBML MML
mmx00252 (Undocumented) SBML MML
mmx00260 Glycine, serine and threonine metabolism SBML MML
mmx00271 (Undocumented) SBML MML
mmx00272 (Undocumented) SBML MML
mmx00280 Valine, leucine and isoleucine degradation SBML MML
mmx00281 Geraniol degradation SBML MML
mmx00290 Valine, leucine and isoleucine biosynthesis SBML MML
mmx00300 Lysine biosynthesis SBML MML
mmx00330 Arginine and proline metabolism SBML MML
mmx00340 Histidine metabolism SBML MML
mmx00350 Tyrosine metabolism SBML MML
mmx00360 Phenylalanine metabolism SBML MML
mmx00362 (Undocumented) SBML MML
mmx00380 Tryptophan metabolism SBML MML
mmx00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mmx00401 Novobiocin biosynthesis SBML MML
mmx00450 Selenoamino acid metabolism SBML MML
mmx00500 Starch and sucrose metabolism SBML MML
mmx00510 (Undocumented) SBML MML
mmx00520 Amino sugar and nucleotide sugar metabolism SBML MML
mmx00521 Streptomycin biosynthesis SBML MML
mmx00523 Polyketide sugar unit biosynthesis SBML MML
mmx00530 (Undocumented) SBML MML
mmx00550 Peptidoglycan biosynthesis SBML MML
mmx00564 Glycerophospholipid metabolism SBML MML
mmx00592 alpha-Linolenic acid metabolism SBML MML
mmx00620 Pyruvate metabolism SBML MML
mmx00624 1- and 2-Methylnaphthalene degradation SBML MML
mmx00625 (Undocumented) SBML MML
mmx00630 Glyoxylate and dicarboxylate metabolism SBML MML
mmx00632 (Undocumented) SBML MML
mmx00640 Propanoate metabolism SBML MML
mmx00642 Ethylbenzene degradation SBML MML
mmx00650 Butanoate metabolism SBML MML
mmx00660 C5-Branched dibasic acid metabolism SBML MML
mmx00670 One carbon pool by folate SBML MML
mmx00680 Methane metabolism SBML MML
mmx00710 (Undocumented) SBML MML
mmx00720 (Undocumented) SBML MML
mmx00730 Thiamine metabolism SBML MML
mmx00750 Vitamin B6 metabolism SBML MML
mmx00760 Nicotinate and nicotinamide metabolism SBML MML
mmx00770 Pantothenate and CoA biosynthesis SBML MML
mmx00780 Biotin metabolism SBML MML
mmx00790 Folate biosynthesis SBML MML
mmx00860 Porphyrin and chlorophyll metabolism SBML MML
mmx00900 Terpenoid backbone biosynthesis SBML MML
mmx00903 (Undocumented) SBML MML
mmx00910 Nitrogen metabolism SBML MML
mmx00950 (Undocumented) SBML MML
mmx00960 (Undocumented) SBML MML
mmx00970 Aminoacyl-tRNA biosynthesis SBML MML
mmx00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.