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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mrd: Methylobacterium radiotolerans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mrd00010 Glycolysis / Gluconeogenesis SBML MML
mrd00020 Citrate cycle (TCA cycle) SBML MML
mrd00030 Pentose phosphate pathway SBML MML
mrd00031 (Undocumented) SBML MML
mrd00040 Pentose and glucuronate interconversions SBML MML
mrd00051 Fructose and mannose metabolism SBML MML
mrd00052 Galactose metabolism SBML MML
mrd00053 Ascorbate and aldarate metabolism SBML MML
mrd00061 Fatty acid biosynthesis SBML MML
mrd00062 Fatty acid elongation in mitochondria SBML MML
mrd00071 Fatty acid metabolism SBML MML
mrd00072 Synthesis and degradation of ketone bodies SBML MML
mrd00100 (Undocumented) SBML MML
mrd00120 (Undocumented) SBML MML
mrd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mrd00150 Androgen and estrogen metabolism SBML MML
mrd00220 (Undocumented) SBML MML
mrd00230 Purine metabolism SBML MML
mrd00240 Pyrimidine metabolism SBML MML
mrd00251 (Undocumented) SBML MML
mrd00252 (Undocumented) SBML MML
mrd00260 Glycine, serine and threonine metabolism SBML MML
mrd00271 (Undocumented) SBML MML
mrd00272 (Undocumented) SBML MML
mrd00280 Valine, leucine and isoleucine degradation SBML MML
mrd00281 Geraniol degradation SBML MML
mrd00290 Valine, leucine and isoleucine biosynthesis SBML MML
mrd00300 Lysine biosynthesis SBML MML
mrd00310 Lysine degradation SBML MML
mrd00311 Penicillin and cephalosporin biosynthesis SBML MML
mrd00330 Arginine and proline metabolism SBML MML
mrd00340 Histidine metabolism SBML MML
mrd00350 Tyrosine metabolism SBML MML
mrd00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
mrd00360 Phenylalanine metabolism SBML MML
mrd00361 gamma-Hexachlorocyclohexane degradation SBML MML
mrd00362 (Undocumented) SBML MML
mrd00363 Bisphenol A degradation SBML MML
mrd00364 Fluorobenzoate degradation SBML MML
mrd00380 Tryptophan metabolism SBML MML
mrd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mrd00401 Novobiocin biosynthesis SBML MML
mrd00410 beta-Alanine metabolism SBML MML
mrd00430 Taurine and hypotaurine metabolism SBML MML
mrd00440 Phosphonate and phosphinate metabolism SBML MML
mrd00450 Selenoamino acid metabolism SBML MML
mrd00460 (Undocumented) SBML MML
mrd00471 D-Glutamine and D-glutamate metabolism SBML MML
mrd00472 D-Arginine and D-ornithine metabolism SBML MML
mrd00473 D-Alanine metabolism SBML MML
mrd00480 Glutathione metabolism SBML MML
mrd00500 Starch and sucrose metabolism SBML MML
mrd00520 Amino sugar and nucleotide sugar metabolism SBML MML
mrd00521 Streptomycin biosynthesis SBML MML
mrd00523 Polyketide sugar unit biosynthesis SBML MML
mrd00530 (Undocumented) SBML MML
mrd00540 Lipopolysaccharide biosynthesis SBML MML
mrd00550 Peptidoglycan biosynthesis SBML MML
mrd00561 Glycerolipid metabolism SBML MML
mrd00562 Inositol phosphate metabolism SBML MML
mrd00564 Glycerophospholipid metabolism SBML MML
mrd00590 Arachidonic acid metabolism SBML MML
mrd00592 alpha-Linolenic acid metabolism SBML MML
mrd00620 Pyruvate metabolism SBML MML
mrd00622 Toluene and xylene degradation SBML MML
mrd00623 2,4-Dichlorobenzoate degradation SBML MML
mrd00624 1- and 2-Methylnaphthalene degradation SBML MML
mrd00626 Naphthalene and anthracene degradation SBML MML
mrd00627 1,4-Dichlorobenzene degradation SBML MML
mrd00628 Fluorene degradation SBML MML
mrd00630 Glyoxylate and dicarboxylate metabolism SBML MML
mrd00631 1,2-Dichloroethane degradation SBML MML
mrd00632 (Undocumented) SBML MML
mrd00640 Propanoate metabolism SBML MML
mrd00641 3-Chloroacrylic acid degradation SBML MML
mrd00642 Ethylbenzene degradation SBML MML
mrd00643 Styrene degradation SBML MML
mrd00650 Butanoate metabolism SBML MML
mrd00660 C5-Branched dibasic acid metabolism SBML MML
mrd00670 One carbon pool by folate SBML MML
mrd00680 Methane metabolism SBML MML
mrd00710 (Undocumented) SBML MML
mrd00720 (Undocumented) SBML MML
mrd00730 Thiamine metabolism SBML MML
mrd00740 Riboflavin metabolism SBML MML
mrd00750 Vitamin B6 metabolism SBML MML
mrd00760 Nicotinate and nicotinamide metabolism SBML MML
mrd00770 Pantothenate and CoA biosynthesis SBML MML
mrd00780 Biotin metabolism SBML MML
mrd00785 Lipoic acid metabolism SBML MML
mrd00790 Folate biosynthesis SBML MML
mrd00791 Atrazine degradation SBML MML
mrd00860 Porphyrin and chlorophyll metabolism SBML MML
mrd00900 Terpenoid backbone biosynthesis SBML MML
mrd00903 (Undocumented) SBML MML
mrd00906 Carotenoid biosynthesis SBML MML
mrd00910 Nitrogen metabolism SBML MML
mrd00920 Sulfur metabolism SBML MML
mrd00930 Caprolactam degradation SBML MML
mrd00940 (Undocumented) SBML MML
mrd00941 (Undocumented) SBML MML
mrd00950 (Undocumented) SBML MML
mrd00960 (Undocumented) SBML MML
mrd00970 Aminoacyl-tRNA biosynthesis SBML MML
mrd00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
mrd00982 (Undocumented) SBML MML
mrd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.