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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism msu: Mannheimia succiniciproducens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
msu00010 Glycolysis / Gluconeogenesis SBML MML
msu00020 Citrate cycle (TCA cycle) SBML MML
msu00030 Pentose phosphate pathway SBML MML
msu00040 Pentose and glucuronate interconversions SBML MML
msu00051 Fructose and mannose metabolism SBML MML
msu00052 Galactose metabolism SBML MML
msu00053 Ascorbate and aldarate metabolism SBML MML
msu00061 Fatty acid biosynthesis SBML MML
msu00071 Fatty acid metabolism SBML MML
msu00100 (Undocumented) SBML MML
msu00120 (Undocumented) SBML MML
msu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
msu00220 (Undocumented) SBML MML
msu00230 Purine metabolism SBML MML
msu00240 Pyrimidine metabolism SBML MML
msu00251 (Undocumented) SBML MML
msu00252 (Undocumented) SBML MML
msu00260 Glycine, serine and threonine metabolism SBML MML
msu00271 (Undocumented) SBML MML
msu00272 (Undocumented) SBML MML
msu00280 Valine, leucine and isoleucine degradation SBML MML
msu00290 Valine, leucine and isoleucine biosynthesis SBML MML
msu00300 Lysine biosynthesis SBML MML
msu00310 Lysine degradation SBML MML
msu00330 Arginine and proline metabolism SBML MML
msu00340 Histidine metabolism SBML MML
msu00350 Tyrosine metabolism SBML MML
msu00360 Phenylalanine metabolism SBML MML
msu00362 (Undocumented) SBML MML
msu00380 Tryptophan metabolism SBML MML
msu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
msu00401 Novobiocin biosynthesis SBML MML
msu00410 beta-Alanine metabolism SBML MML
msu00430 Taurine and hypotaurine metabolism SBML MML
msu00450 Selenoamino acid metabolism SBML MML
msu00460 (Undocumented) SBML MML
msu00471 D-Glutamine and D-glutamate metabolism SBML MML
msu00473 D-Alanine metabolism SBML MML
msu00480 Glutathione metabolism SBML MML
msu00500 Starch and sucrose metabolism SBML MML
msu00520 Amino sugar and nucleotide sugar metabolism SBML MML
msu00521 Streptomycin biosynthesis SBML MML
msu00530 (Undocumented) SBML MML
msu00540 Lipopolysaccharide biosynthesis SBML MML
msu00550 Peptidoglycan biosynthesis SBML MML
msu00561 Glycerolipid metabolism SBML MML
msu00562 Inositol phosphate metabolism SBML MML
msu00564 Glycerophospholipid metabolism SBML MML
msu00600 Sphingolipid metabolism SBML MML
msu00620 Pyruvate metabolism SBML MML
msu00624 1- and 2-Methylnaphthalene degradation SBML MML
msu00630 Glyoxylate and dicarboxylate metabolism SBML MML
msu00632 (Undocumented) SBML MML
msu00633 Trinitrotoluene degradation SBML MML
msu00640 Propanoate metabolism SBML MML
msu00641 3-Chloroacrylic acid degradation SBML MML
msu00650 Butanoate metabolism SBML MML
msu00660 C5-Branched dibasic acid metabolism SBML MML
msu00670 One carbon pool by folate SBML MML
msu00680 Methane metabolism SBML MML
msu00710 (Undocumented) SBML MML
msu00720 (Undocumented) SBML MML
msu00730 Thiamine metabolism SBML MML
msu00740 Riboflavin metabolism SBML MML
msu00750 Vitamin B6 metabolism SBML MML
msu00760 Nicotinate and nicotinamide metabolism SBML MML
msu00770 Pantothenate and CoA biosynthesis SBML MML
msu00780 Biotin metabolism SBML MML
msu00785 Lipoic acid metabolism SBML MML
msu00790 Folate biosynthesis SBML MML
msu00860 Porphyrin and chlorophyll metabolism SBML MML
msu00900 Terpenoid backbone biosynthesis SBML MML
msu00903 (Undocumented) SBML MML
msu00910 Nitrogen metabolism SBML MML
msu00920 Sulfur metabolism SBML MML
msu00940 (Undocumented) SBML MML
msu00950 (Undocumented) SBML MML
msu00960 (Undocumented) SBML MML
msu00970 Aminoacyl-tRNA biosynthesis SBML MML
msu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
msu00982 (Undocumented) SBML MML
msu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.