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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism mva: Mycobacterium vanbaalenii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
mva00010 Glycolysis / Gluconeogenesis SBML MML
mva00020 Citrate cycle (TCA cycle) SBML MML
mva00030 Pentose phosphate pathway SBML MML
mva00031 (Undocumented) SBML MML
mva00040 Pentose and glucuronate interconversions SBML MML
mva00051 Fructose and mannose metabolism SBML MML
mva00052 Galactose metabolism SBML MML
mva00053 Ascorbate and aldarate metabolism SBML MML
mva00061 Fatty acid biosynthesis SBML MML
mva00071 Fatty acid metabolism SBML MML
mva00072 Synthesis and degradation of ketone bodies SBML MML
mva00100 (Undocumented) SBML MML
mva00120 (Undocumented) SBML MML
mva00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
mva00140 (Undocumented) SBML MML
mva00150 Androgen and estrogen metabolism SBML MML
mva00220 (Undocumented) SBML MML
mva00230 Purine metabolism SBML MML
mva00240 Pyrimidine metabolism SBML MML
mva00251 (Undocumented) SBML MML
mva00252 (Undocumented) SBML MML
mva00260 Glycine, serine and threonine metabolism SBML MML
mva00271 (Undocumented) SBML MML
mva00272 (Undocumented) SBML MML
mva00280 Valine, leucine and isoleucine degradation SBML MML
mva00281 Geraniol degradation SBML MML
mva00290 Valine, leucine and isoleucine biosynthesis SBML MML
mva00300 Lysine biosynthesis SBML MML
mva00310 Lysine degradation SBML MML
mva00330 Arginine and proline metabolism SBML MML
mva00340 Histidine metabolism SBML MML
mva00350 Tyrosine metabolism SBML MML
mva00360 Phenylalanine metabolism SBML MML
mva00361 gamma-Hexachlorocyclohexane degradation SBML MML
mva00362 (Undocumented) SBML MML
mva00364 Fluorobenzoate degradation SBML MML
mva00380 Tryptophan metabolism SBML MML
mva00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
mva00401 Novobiocin biosynthesis SBML MML
mva00410 beta-Alanine metabolism SBML MML
mva00430 Taurine and hypotaurine metabolism SBML MML
mva00450 Selenoamino acid metabolism SBML MML
mva00460 (Undocumented) SBML MML
mva00471 D-Glutamine and D-glutamate metabolism SBML MML
mva00473 D-Alanine metabolism SBML MML
mva00480 Glutathione metabolism SBML MML
mva00500 Starch and sucrose metabolism SBML MML
mva00520 Amino sugar and nucleotide sugar metabolism SBML MML
mva00521 Streptomycin biosynthesis SBML MML
mva00523 Polyketide sugar unit biosynthesis SBML MML
mva00530 (Undocumented) SBML MML
mva00550 Peptidoglycan biosynthesis SBML MML
mva00561 Glycerolipid metabolism SBML MML
mva00562 Inositol phosphate metabolism SBML MML
mva00564 Glycerophospholipid metabolism SBML MML
mva00565 Ether lipid metabolism SBML MML
mva00590 Arachidonic acid metabolism SBML MML
mva00592 alpha-Linolenic acid metabolism SBML MML
mva00620 Pyruvate metabolism SBML MML
mva00622 Toluene and xylene degradation SBML MML
mva00623 2,4-Dichlorobenzoate degradation SBML MML
mva00624 1- and 2-Methylnaphthalene degradation SBML MML
mva00626 Naphthalene and anthracene degradation SBML MML
mva00627 1,4-Dichlorobenzene degradation SBML MML
mva00628 Fluorene degradation SBML MML
mva00630 Glyoxylate and dicarboxylate metabolism SBML MML
mva00631 1,2-Dichloroethane degradation SBML MML
mva00632 (Undocumented) SBML MML
mva00633 Trinitrotoluene degradation SBML MML
mva00640 Propanoate metabolism SBML MML
mva00641 3-Chloroacrylic acid degradation SBML MML
mva00642 Ethylbenzene degradation SBML MML
mva00643 Styrene degradation SBML MML
mva00650 Butanoate metabolism SBML MML
mva00660 C5-Branched dibasic acid metabolism SBML MML
mva00670 One carbon pool by folate SBML MML
mva00680 Methane metabolism SBML MML
mva00710 (Undocumented) SBML MML
mva00720 (Undocumented) SBML MML
mva00730 Thiamine metabolism SBML MML
mva00740 Riboflavin metabolism SBML MML
mva00750 Vitamin B6 metabolism SBML MML
mva00760 Nicotinate and nicotinamide metabolism SBML MML
mva00770 Pantothenate and CoA biosynthesis SBML MML
mva00780 Biotin metabolism SBML MML
mva00785 Lipoic acid metabolism SBML MML
mva00790 Folate biosynthesis SBML MML
mva00860 Porphyrin and chlorophyll metabolism SBML MML
mva00900 Terpenoid backbone biosynthesis SBML MML
mva00903 (Undocumented) SBML MML
mva00906 Carotenoid biosynthesis SBML MML
mva00910 Nitrogen metabolism SBML MML
mva00920 Sulfur metabolism SBML MML
mva00930 Caprolactam degradation SBML MML
mva00941 (Undocumented) SBML MML
mva00960 (Undocumented) SBML MML
mva00970 Aminoacyl-tRNA biosynthesis SBML MML
mva00982 (Undocumented) SBML MML
mva00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.