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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism net: Nitrosomonas eutropha

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
net00010 Glycolysis / Gluconeogenesis SBML MML
net00020 Citrate cycle (TCA cycle) SBML MML
net00030 Pentose phosphate pathway SBML MML
net00040 Pentose and glucuronate interconversions SBML MML
net00051 Fructose and mannose metabolism SBML MML
net00052 Galactose metabolism SBML MML
net00053 Ascorbate and aldarate metabolism SBML MML
net00061 Fatty acid biosynthesis SBML MML
net00071 Fatty acid metabolism SBML MML
net00100 (Undocumented) SBML MML
net00120 (Undocumented) SBML MML
net00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
net00220 (Undocumented) SBML MML
net00230 Purine metabolism SBML MML
net00240 Pyrimidine metabolism SBML MML
net00251 (Undocumented) SBML MML
net00252 (Undocumented) SBML MML
net00260 Glycine, serine and threonine metabolism SBML MML
net00271 (Undocumented) SBML MML
net00272 (Undocumented) SBML MML
net00280 Valine, leucine and isoleucine degradation SBML MML
net00290 Valine, leucine and isoleucine biosynthesis SBML MML
net00300 Lysine biosynthesis SBML MML
net00310 Lysine degradation SBML MML
net00311 Penicillin and cephalosporin biosynthesis SBML MML
net00330 Arginine and proline metabolism SBML MML
net00340 Histidine metabolism SBML MML
net00350 Tyrosine metabolism SBML MML
net00360 Phenylalanine metabolism SBML MML
net00380 Tryptophan metabolism SBML MML
net00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
net00401 Novobiocin biosynthesis SBML MML
net00410 beta-Alanine metabolism SBML MML
net00430 Taurine and hypotaurine metabolism SBML MML
net00450 Selenoamino acid metabolism SBML MML
net00460 (Undocumented) SBML MML
net00471 D-Glutamine and D-glutamate metabolism SBML MML
net00472 D-Arginine and D-ornithine metabolism SBML MML
net00473 D-Alanine metabolism SBML MML
net00480 Glutathione metabolism SBML MML
net00500 Starch and sucrose metabolism SBML MML
net00520 Amino sugar and nucleotide sugar metabolism SBML MML
net00521 Streptomycin biosynthesis SBML MML
net00523 Polyketide sugar unit biosynthesis SBML MML
net00530 (Undocumented) SBML MML
net00540 Lipopolysaccharide biosynthesis SBML MML
net00550 Peptidoglycan biosynthesis SBML MML
net00561 Glycerolipid metabolism SBML MML
net00562 Inositol phosphate metabolism SBML MML
net00564 Glycerophospholipid metabolism SBML MML
net00590 Arachidonic acid metabolism SBML MML
net00620 Pyruvate metabolism SBML MML
net00624 1- and 2-Methylnaphthalene degradation SBML MML
net00630 Glyoxylate and dicarboxylate metabolism SBML MML
net00632 (Undocumented) SBML MML
net00640 Propanoate metabolism SBML MML
net00641 3-Chloroacrylic acid degradation SBML MML
net00650 Butanoate metabolism SBML MML
net00660 C5-Branched dibasic acid metabolism SBML MML
net00670 One carbon pool by folate SBML MML
net00680 Methane metabolism SBML MML
net00710 (Undocumented) SBML MML
net00720 (Undocumented) SBML MML
net00730 Thiamine metabolism SBML MML
net00740 Riboflavin metabolism SBML MML
net00750 Vitamin B6 metabolism SBML MML
net00760 Nicotinate and nicotinamide metabolism SBML MML
net00770 Pantothenate and CoA biosynthesis SBML MML
net00780 Biotin metabolism SBML MML
net00785 Lipoic acid metabolism SBML MML
net00790 Folate biosynthesis SBML MML
net00791 Atrazine degradation SBML MML
net00860 Porphyrin and chlorophyll metabolism SBML MML
net00900 Terpenoid backbone biosynthesis SBML MML
net00910 Nitrogen metabolism SBML MML
net00920 Sulfur metabolism SBML MML
net00970 Aminoacyl-tRNA biosynthesis SBML MML
net00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
net00982 (Undocumented) SBML MML
net00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.