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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism nfa: Nocardia farcinica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
nfa00010 Glycolysis / Gluconeogenesis SBML MML
nfa00020 Citrate cycle (TCA cycle) SBML MML
nfa00030 Pentose phosphate pathway SBML MML
nfa00031 (Undocumented) SBML MML
nfa00040 Pentose and glucuronate interconversions SBML MML
nfa00051 Fructose and mannose metabolism SBML MML
nfa00052 Galactose metabolism SBML MML
nfa00053 Ascorbate and aldarate metabolism SBML MML
nfa00061 Fatty acid biosynthesis SBML MML
nfa00062 Fatty acid elongation in mitochondria SBML MML
nfa00071 Fatty acid metabolism SBML MML
nfa00072 Synthesis and degradation of ketone bodies SBML MML
nfa00100 (Undocumented) SBML MML
nfa00120 (Undocumented) SBML MML
nfa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
nfa00140 (Undocumented) SBML MML
nfa00150 Androgen and estrogen metabolism SBML MML
nfa00220 (Undocumented) SBML MML
nfa00230 Purine metabolism SBML MML
nfa00240 Pyrimidine metabolism SBML MML
nfa00251 (Undocumented) SBML MML
nfa00252 (Undocumented) SBML MML
nfa00260 Glycine, serine and threonine metabolism SBML MML
nfa00271 (Undocumented) SBML MML
nfa00272 (Undocumented) SBML MML
nfa00280 Valine, leucine and isoleucine degradation SBML MML
nfa00281 Geraniol degradation SBML MML
nfa00290 Valine, leucine and isoleucine biosynthesis SBML MML
nfa00300 Lysine biosynthesis SBML MML
nfa00310 Lysine degradation SBML MML
nfa00330 Arginine and proline metabolism SBML MML
nfa00340 Histidine metabolism SBML MML
nfa00350 Tyrosine metabolism SBML MML
nfa00360 Phenylalanine metabolism SBML MML
nfa00361 gamma-Hexachlorocyclohexane degradation SBML MML
nfa00362 (Undocumented) SBML MML
nfa00363 Bisphenol A degradation SBML MML
nfa00364 Fluorobenzoate degradation SBML MML
nfa00380 Tryptophan metabolism SBML MML
nfa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
nfa00401 Novobiocin biosynthesis SBML MML
nfa00410 beta-Alanine metabolism SBML MML
nfa00430 Taurine and hypotaurine metabolism SBML MML
nfa00450 Selenoamino acid metabolism SBML MML
nfa00460 (Undocumented) SBML MML
nfa00471 D-Glutamine and D-glutamate metabolism SBML MML
nfa00473 D-Alanine metabolism SBML MML
nfa00480 Glutathione metabolism SBML MML
nfa00500 Starch and sucrose metabolism SBML MML
nfa00520 Amino sugar and nucleotide sugar metabolism SBML MML
nfa00521 Streptomycin biosynthesis SBML MML
nfa00523 Polyketide sugar unit biosynthesis SBML MML
nfa00530 (Undocumented) SBML MML
nfa00540 Lipopolysaccharide biosynthesis SBML MML
nfa00550 Peptidoglycan biosynthesis SBML MML
nfa00561 Glycerolipid metabolism SBML MML
nfa00562 Inositol phosphate metabolism SBML MML
nfa00564 Glycerophospholipid metabolism SBML MML
nfa00565 Ether lipid metabolism SBML MML
nfa00590 Arachidonic acid metabolism SBML MML
nfa00591 Linoleic acid metabolism SBML MML
nfa00592 alpha-Linolenic acid metabolism SBML MML
nfa00620 Pyruvate metabolism SBML MML
nfa00621 (Undocumented) SBML MML
nfa00622 Toluene and xylene degradation SBML MML
nfa00624 1- and 2-Methylnaphthalene degradation SBML MML
nfa00626 Naphthalene and anthracene degradation SBML MML
nfa00627 1,4-Dichlorobenzene degradation SBML MML
nfa00628 Fluorene degradation SBML MML
nfa00629 Carbazole degradation SBML MML
nfa00630 Glyoxylate and dicarboxylate metabolism SBML MML
nfa00631 1,2-Dichloroethane degradation SBML MML
nfa00632 (Undocumented) SBML MML
nfa00640 Propanoate metabolism SBML MML
nfa00641 3-Chloroacrylic acid degradation SBML MML
nfa00642 Ethylbenzene degradation SBML MML
nfa00643 Styrene degradation SBML MML
nfa00650 Butanoate metabolism SBML MML
nfa00660 C5-Branched dibasic acid metabolism SBML MML
nfa00670 One carbon pool by folate SBML MML
nfa00680 Methane metabolism SBML MML
nfa00710 (Undocumented) SBML MML
nfa00720 (Undocumented) SBML MML
nfa00730 Thiamine metabolism SBML MML
nfa00740 Riboflavin metabolism SBML MML
nfa00750 Vitamin B6 metabolism SBML MML
nfa00760 Nicotinate and nicotinamide metabolism SBML MML
nfa00770 Pantothenate and CoA biosynthesis SBML MML
nfa00780 Biotin metabolism SBML MML
nfa00785 Lipoic acid metabolism SBML MML
nfa00790 Folate biosynthesis SBML MML
nfa00791 Atrazine degradation SBML MML
nfa00860 Porphyrin and chlorophyll metabolism SBML MML
nfa00900 Terpenoid backbone biosynthesis SBML MML
nfa00903 (Undocumented) SBML MML
nfa00906 Carotenoid biosynthesis SBML MML
nfa00910 Nitrogen metabolism SBML MML
nfa00920 Sulfur metabolism SBML MML
nfa00930 Caprolactam degradation SBML MML
nfa00940 (Undocumented) SBML MML
nfa00960 (Undocumented) SBML MML
nfa00970 Aminoacyl-tRNA biosynthesis SBML MML
nfa00982 (Undocumented) SBML MML
nfa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.