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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism nis: Nitratiruptor sp. SB155-2

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
nis00010 Glycolysis / Gluconeogenesis SBML MML
nis00020 Citrate cycle (TCA cycle) SBML MML
nis00030 Pentose phosphate pathway SBML MML
nis00040 Pentose and glucuronate interconversions SBML MML
nis00051 Fructose and mannose metabolism SBML MML
nis00052 Galactose metabolism SBML MML
nis00061 Fatty acid biosynthesis SBML MML
nis00100 (Undocumented) SBML MML
nis00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
nis00220 (Undocumented) SBML MML
nis00230 Purine metabolism SBML MML
nis00240 Pyrimidine metabolism SBML MML
nis00251 (Undocumented) SBML MML
nis00252 (Undocumented) SBML MML
nis00260 Glycine, serine and threonine metabolism SBML MML
nis00271 (Undocumented) SBML MML
nis00272 (Undocumented) SBML MML
nis00280 Valine, leucine and isoleucine degradation SBML MML
nis00290 Valine, leucine and isoleucine biosynthesis SBML MML
nis00300 Lysine biosynthesis SBML MML
nis00310 Lysine degradation SBML MML
nis00330 Arginine and proline metabolism SBML MML
nis00340 Histidine metabolism SBML MML
nis00350 Tyrosine metabolism SBML MML
nis00360 Phenylalanine metabolism SBML MML
nis00380 Tryptophan metabolism SBML MML
nis00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
nis00401 Novobiocin biosynthesis SBML MML
nis00410 beta-Alanine metabolism SBML MML
nis00450 Selenoamino acid metabolism SBML MML
nis00460 (Undocumented) SBML MML
nis00471 D-Glutamine and D-glutamate metabolism SBML MML
nis00473 D-Alanine metabolism SBML MML
nis00480 Glutathione metabolism SBML MML
nis00500 Starch and sucrose metabolism SBML MML
nis00520 Amino sugar and nucleotide sugar metabolism SBML MML
nis00521 Streptomycin biosynthesis SBML MML
nis00530 (Undocumented) SBML MML
nis00540 Lipopolysaccharide biosynthesis SBML MML
nis00550 Peptidoglycan biosynthesis SBML MML
nis00561 Glycerolipid metabolism SBML MML
nis00562 Inositol phosphate metabolism SBML MML
nis00564 Glycerophospholipid metabolism SBML MML
nis00620 Pyruvate metabolism SBML MML
nis00630 Glyoxylate and dicarboxylate metabolism SBML MML
nis00632 (Undocumented) SBML MML
nis00633 Trinitrotoluene degradation SBML MML
nis00640 Propanoate metabolism SBML MML
nis00650 Butanoate metabolism SBML MML
nis00660 C5-Branched dibasic acid metabolism SBML MML
nis00670 One carbon pool by folate SBML MML
nis00680 Methane metabolism SBML MML
nis00710 (Undocumented) SBML MML
nis00720 (Undocumented) SBML MML
nis00730 Thiamine metabolism SBML MML
nis00740 Riboflavin metabolism SBML MML
nis00750 Vitamin B6 metabolism SBML MML
nis00760 Nicotinate and nicotinamide metabolism SBML MML
nis00770 Pantothenate and CoA biosynthesis SBML MML
nis00780 Biotin metabolism SBML MML
nis00785 Lipoic acid metabolism SBML MML
nis00790 Folate biosynthesis SBML MML
nis00860 Porphyrin and chlorophyll metabolism SBML MML
nis00900 Terpenoid backbone biosynthesis SBML MML
nis00910 Nitrogen metabolism SBML MML
nis00920 Sulfur metabolism SBML MML
nis00940 (Undocumented) SBML MML
nis00950 (Undocumented) SBML MML
nis00970 Aminoacyl-tRNA biosynthesis SBML MML
nis00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.