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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism nme: Neisseria meningitidis MC58 (serogroup B)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
nme00010 Glycolysis / Gluconeogenesis SBML MML
nme00020 Citrate cycle (TCA cycle) SBML MML
nme00030 Pentose phosphate pathway SBML MML
nme00040 Pentose and glucuronate interconversions SBML MML
nme00051 Fructose and mannose metabolism SBML MML
nme00052 Galactose metabolism SBML MML
nme00061 Fatty acid biosynthesis SBML MML
nme00071 Fatty acid metabolism SBML MML
nme00100 (Undocumented) SBML MML
nme00120 (Undocumented) SBML MML
nme00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
nme00220 (Undocumented) SBML MML
nme00230 Purine metabolism SBML MML
nme00240 Pyrimidine metabolism SBML MML
nme00251 (Undocumented) SBML MML
nme00252 (Undocumented) SBML MML
nme00260 Glycine, serine and threonine metabolism SBML MML
nme00271 (Undocumented) SBML MML
nme00272 (Undocumented) SBML MML
nme00280 Valine, leucine and isoleucine degradation SBML MML
nme00281 Geraniol degradation SBML MML
nme00290 Valine, leucine and isoleucine biosynthesis SBML MML
nme00300 Lysine biosynthesis SBML MML
nme00310 Lysine degradation SBML MML
nme00330 Arginine and proline metabolism SBML MML
nme00340 Histidine metabolism SBML MML
nme00350 Tyrosine metabolism SBML MML
nme00360 Phenylalanine metabolism SBML MML
nme00380 Tryptophan metabolism SBML MML
nme00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
nme00401 Novobiocin biosynthesis SBML MML
nme00410 beta-Alanine metabolism SBML MML
nme00430 Taurine and hypotaurine metabolism SBML MML
nme00450 Selenoamino acid metabolism SBML MML
nme00460 (Undocumented) SBML MML
nme00471 D-Glutamine and D-glutamate metabolism SBML MML
nme00473 D-Alanine metabolism SBML MML
nme00480 Glutathione metabolism SBML MML
nme00500 Starch and sucrose metabolism SBML MML
nme00520 Amino sugar and nucleotide sugar metabolism SBML MML
nme00521 Streptomycin biosynthesis SBML MML
nme00523 Polyketide sugar unit biosynthesis SBML MML
nme00530 (Undocumented) SBML MML
nme00540 Lipopolysaccharide biosynthesis SBML MML
nme00550 Peptidoglycan biosynthesis SBML MML
nme00561 Glycerolipid metabolism SBML MML
nme00562 Inositol phosphate metabolism SBML MML
nme00564 Glycerophospholipid metabolism SBML MML
nme00590 Arachidonic acid metabolism SBML MML
nme00620 Pyruvate metabolism SBML MML
nme00624 1- and 2-Methylnaphthalene degradation SBML MML
nme00630 Glyoxylate and dicarboxylate metabolism SBML MML
nme00640 Propanoate metabolism SBML MML
nme00641 3-Chloroacrylic acid degradation SBML MML
nme00650 Butanoate metabolism SBML MML
nme00660 C5-Branched dibasic acid metabolism SBML MML
nme00670 One carbon pool by folate SBML MML
nme00680 Methane metabolism SBML MML
nme00710 (Undocumented) SBML MML
nme00720 (Undocumented) SBML MML
nme00730 Thiamine metabolism SBML MML
nme00740 Riboflavin metabolism SBML MML
nme00750 Vitamin B6 metabolism SBML MML
nme00760 Nicotinate and nicotinamide metabolism SBML MML
nme00770 Pantothenate and CoA biosynthesis SBML MML
nme00780 Biotin metabolism SBML MML
nme00785 Lipoic acid metabolism SBML MML
nme00790 Folate biosynthesis SBML MML
nme00860 Porphyrin and chlorophyll metabolism SBML MML
nme00900 Terpenoid backbone biosynthesis SBML MML
nme00910 Nitrogen metabolism SBML MML
nme00920 Sulfur metabolism SBML MML
nme00950 (Undocumented) SBML MML
nme00970 Aminoacyl-tRNA biosynthesis SBML MML
nme00982 (Undocumented) SBML MML
nme00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.