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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism nph: Natronomonas pharaonis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
nph00010 Glycolysis / Gluconeogenesis SBML MML
nph00020 Citrate cycle (TCA cycle) SBML MML
nph00030 Pentose phosphate pathway SBML MML
nph00040 Pentose and glucuronate interconversions SBML MML
nph00051 Fructose and mannose metabolism SBML MML
nph00052 Galactose metabolism SBML MML
nph00053 Ascorbate and aldarate metabolism SBML MML
nph00061 Fatty acid biosynthesis SBML MML
nph00062 Fatty acid elongation in mitochondria SBML MML
nph00071 Fatty acid metabolism SBML MML
nph00072 Synthesis and degradation of ketone bodies SBML MML
nph00100 (Undocumented) SBML MML
nph00120 (Undocumented) SBML MML
nph00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
nph00150 Androgen and estrogen metabolism SBML MML
nph00220 (Undocumented) SBML MML
nph00230 Purine metabolism SBML MML
nph00240 Pyrimidine metabolism SBML MML
nph00251 (Undocumented) SBML MML
nph00252 (Undocumented) SBML MML
nph00260 Glycine, serine and threonine metabolism SBML MML
nph00271 (Undocumented) SBML MML
nph00272 (Undocumented) SBML MML
nph00280 Valine, leucine and isoleucine degradation SBML MML
nph00281 Geraniol degradation SBML MML
nph00290 Valine, leucine and isoleucine biosynthesis SBML MML
nph00300 Lysine biosynthesis SBML MML
nph00310 Lysine degradation SBML MML
nph00330 Arginine and proline metabolism SBML MML
nph00340 Histidine metabolism SBML MML
nph00350 Tyrosine metabolism SBML MML
nph00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
nph00360 Phenylalanine metabolism SBML MML
nph00362 (Undocumented) SBML MML
nph00380 Tryptophan metabolism SBML MML
nph00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
nph00401 Novobiocin biosynthesis SBML MML
nph00410 beta-Alanine metabolism SBML MML
nph00440 Phosphonate and phosphinate metabolism SBML MML
nph00450 Selenoamino acid metabolism SBML MML
nph00460 (Undocumented) SBML MML
nph00480 Glutathione metabolism SBML MML
nph00500 Starch and sucrose metabolism SBML MML
nph00510 (Undocumented) SBML MML
nph00520 Amino sugar and nucleotide sugar metabolism SBML MML
nph00521 Streptomycin biosynthesis SBML MML
nph00530 (Undocumented) SBML MML
nph00550 Peptidoglycan biosynthesis SBML MML
nph00562 Inositol phosphate metabolism SBML MML
nph00564 Glycerophospholipid metabolism SBML MML
nph00592 alpha-Linolenic acid metabolism SBML MML
nph00620 Pyruvate metabolism SBML MML
nph00623 2,4-Dichlorobenzoate degradation SBML MML
nph00624 1- and 2-Methylnaphthalene degradation SBML MML
nph00626 Naphthalene and anthracene degradation SBML MML
nph00628 Fluorene degradation SBML MML
nph00630 Glyoxylate and dicarboxylate metabolism SBML MML
nph00632 (Undocumented) SBML MML
nph00640 Propanoate metabolism SBML MML
nph00641 3-Chloroacrylic acid degradation SBML MML
nph00643 Styrene degradation SBML MML
nph00650 Butanoate metabolism SBML MML
nph00660 C5-Branched dibasic acid metabolism SBML MML
nph00670 One carbon pool by folate SBML MML
nph00680 Methane metabolism SBML MML
nph00710 (Undocumented) SBML MML
nph00720 (Undocumented) SBML MML
nph00730 Thiamine metabolism SBML MML
nph00740 Riboflavin metabolism SBML MML
nph00750 Vitamin B6 metabolism SBML MML
nph00760 Nicotinate and nicotinamide metabolism SBML MML
nph00770 Pantothenate and CoA biosynthesis SBML MML
nph00780 Biotin metabolism SBML MML
nph00785 Lipoic acid metabolism SBML MML
nph00790 Folate biosynthesis SBML MML
nph00860 Porphyrin and chlorophyll metabolism SBML MML
nph00900 Terpenoid backbone biosynthesis SBML MML
nph00903 (Undocumented) SBML MML
nph00906 Carotenoid biosynthesis SBML MML
nph00910 Nitrogen metabolism SBML MML
nph00920 Sulfur metabolism SBML MML
nph00930 Caprolactam degradation SBML MML
nph00940 (Undocumented) SBML MML
nph00950 (Undocumented) SBML MML
nph00960 (Undocumented) SBML MML
nph00970 Aminoacyl-tRNA biosynthesis SBML MML
nph00982 (Undocumented) SBML MML
nph00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.