This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism osa: Oryza sativa japonica (Japanese rice)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
osa00010 Glycolysis / Gluconeogenesis SBML MML
osa00020 Citrate cycle (TCA cycle) SBML MML
osa00030 Pentose phosphate pathway SBML MML
osa00031 (Undocumented) SBML MML
osa00040 Pentose and glucuronate interconversions SBML MML
osa00051 Fructose and mannose metabolism SBML MML
osa00052 Galactose metabolism SBML MML
osa00053 Ascorbate and aldarate metabolism SBML MML
osa00061 Fatty acid biosynthesis SBML MML
osa00062 Fatty acid elongation in mitochondria SBML MML
osa00071 Fatty acid metabolism SBML MML
osa00072 Synthesis and degradation of ketone bodies SBML MML
osa00100 (Undocumented) SBML MML
osa00120 (Undocumented) SBML MML
osa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
osa00150 Androgen and estrogen metabolism SBML MML
osa00220 (Undocumented) SBML MML
osa00230 Purine metabolism SBML MML
osa00240 Pyrimidine metabolism SBML MML
osa00251 (Undocumented) SBML MML
osa00252 (Undocumented) SBML MML
osa00260 Glycine, serine and threonine metabolism SBML MML
osa00271 (Undocumented) SBML MML
osa00272 (Undocumented) SBML MML
osa00280 Valine, leucine and isoleucine degradation SBML MML
osa00281 Geraniol degradation SBML MML
osa00290 Valine, leucine and isoleucine biosynthesis SBML MML
osa00300 Lysine biosynthesis SBML MML
osa00310 Lysine degradation SBML MML
osa00330 Arginine and proline metabolism SBML MML
osa00340 Histidine metabolism SBML MML
osa00350 Tyrosine metabolism SBML MML
osa00360 Phenylalanine metabolism SBML MML
osa00361 gamma-Hexachlorocyclohexane degradation SBML MML
osa00362 (Undocumented) SBML MML
osa00363 Bisphenol A degradation SBML MML
osa00364 Fluorobenzoate degradation SBML MML
osa00380 Tryptophan metabolism SBML MML
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
osa00401 Novobiocin biosynthesis SBML MML
osa00410 beta-Alanine metabolism SBML MML
osa00430 Taurine and hypotaurine metabolism SBML MML
osa00440 Phosphonate and phosphinate metabolism SBML MML
osa00450 Selenoamino acid metabolism SBML MML
osa00460 (Undocumented) SBML MML
osa00480 Glutathione metabolism SBML MML
osa00500 Starch and sucrose metabolism SBML MML
osa00510 (Undocumented) SBML MML
osa00520 Amino sugar and nucleotide sugar metabolism SBML MML
osa00521 Streptomycin biosynthesis SBML MML
osa00530 (Undocumented) SBML MML
osa00540 Lipopolysaccharide biosynthesis SBML MML
osa00550 Peptidoglycan biosynthesis SBML MML
osa00561 Glycerolipid metabolism SBML MML
osa00562 Inositol phosphate metabolism SBML MML
osa00564 Glycerophospholipid metabolism SBML MML
osa00565 Ether lipid metabolism SBML MML
osa00590 Arachidonic acid metabolism SBML MML
osa00591 Linoleic acid metabolism SBML MML
osa00592 alpha-Linolenic acid metabolism SBML MML
osa00600 Sphingolipid metabolism SBML MML
osa00620 Pyruvate metabolism SBML MML
osa00624 1- and 2-Methylnaphthalene degradation SBML MML
osa00626 Naphthalene and anthracene degradation SBML MML
osa00627 1,4-Dichlorobenzene degradation SBML MML
osa00630 Glyoxylate and dicarboxylate metabolism SBML MML
osa00632 (Undocumented) SBML MML
osa00640 Propanoate metabolism SBML MML
osa00641 3-Chloroacrylic acid degradation SBML MML
osa00643 Styrene degradation SBML MML
osa00650 Butanoate metabolism SBML MML
osa00670 One carbon pool by folate SBML MML
osa00680 Methane metabolism SBML MML
osa00710 (Undocumented) SBML MML
osa00720 (Undocumented) SBML MML
osa00730 Thiamine metabolism SBML MML
osa00740 Riboflavin metabolism SBML MML
osa00750 Vitamin B6 metabolism SBML MML
osa00760 Nicotinate and nicotinamide metabolism SBML MML
osa00770 Pantothenate and CoA biosynthesis SBML MML
osa00780 Biotin metabolism SBML MML
osa00785 Lipoic acid metabolism SBML MML
osa00790 Folate biosynthesis SBML MML
osa00860 Porphyrin and chlorophyll metabolism SBML MML
osa00900 Terpenoid backbone biosynthesis SBML MML
osa00903 (Undocumented) SBML MML
osa00904 (Undocumented) SBML MML
osa00905 Brassinosteroid biosynthesis SBML MML
osa00906 Carotenoid biosynthesis SBML MML
osa00908 (Undocumented) SBML MML
osa00910 Nitrogen metabolism SBML MML
osa00920 Sulfur metabolism SBML MML
osa00930 Caprolactam degradation SBML MML
osa00940 (Undocumented) SBML MML
osa00941 (Undocumented) SBML MML
osa00944 (Undocumented) SBML MML
osa00950 (Undocumented) SBML MML
osa00960 (Undocumented) SBML MML
osa00970 Aminoacyl-tRNA biosynthesis SBML MML
osa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
osa00982 (Undocumented) SBML MML
osa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.