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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pas: Pyrobaculum arsenaticum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pas00010 Glycolysis / Gluconeogenesis SBML MML
pas00020 Citrate cycle (TCA cycle) SBML MML
pas00030 Pentose phosphate pathway SBML MML
pas00031 (Undocumented) SBML MML
pas00051 Fructose and mannose metabolism SBML MML
pas00052 Galactose metabolism SBML MML
pas00061 Fatty acid biosynthesis SBML MML
pas00062 Fatty acid elongation in mitochondria SBML MML
pas00071 Fatty acid metabolism SBML MML
pas00100 (Undocumented) SBML MML
pas00120 (Undocumented) SBML MML
pas00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pas00220 (Undocumented) SBML MML
pas00230 Purine metabolism SBML MML
pas00240 Pyrimidine metabolism SBML MML
pas00251 (Undocumented) SBML MML
pas00252 (Undocumented) SBML MML
pas00260 Glycine, serine and threonine metabolism SBML MML
pas00271 (Undocumented) SBML MML
pas00272 (Undocumented) SBML MML
pas00280 Valine, leucine and isoleucine degradation SBML MML
pas00281 Geraniol degradation SBML MML
pas00290 Valine, leucine and isoleucine biosynthesis SBML MML
pas00300 Lysine biosynthesis SBML MML
pas00310 Lysine degradation SBML MML
pas00330 Arginine and proline metabolism SBML MML
pas00340 Histidine metabolism SBML MML
pas00350 Tyrosine metabolism SBML MML
pas00360 Phenylalanine metabolism SBML MML
pas00380 Tryptophan metabolism SBML MML
pas00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pas00401 Novobiocin biosynthesis SBML MML
pas00410 beta-Alanine metabolism SBML MML
pas00450 Selenoamino acid metabolism SBML MML
pas00460 (Undocumented) SBML MML
pas00480 Glutathione metabolism SBML MML
pas00500 Starch and sucrose metabolism SBML MML
pas00510 (Undocumented) SBML MML
pas00520 Amino sugar and nucleotide sugar metabolism SBML MML
pas00521 Streptomycin biosynthesis SBML MML
pas00523 Polyketide sugar unit biosynthesis SBML MML
pas00550 Peptidoglycan biosynthesis SBML MML
pas00562 Inositol phosphate metabolism SBML MML
pas00564 Glycerophospholipid metabolism SBML MML
pas00592 alpha-Linolenic acid metabolism SBML MML
pas00620 Pyruvate metabolism SBML MML
pas00624 1- and 2-Methylnaphthalene degradation SBML MML
pas00630 Glyoxylate and dicarboxylate metabolism SBML MML
pas00632 (Undocumented) SBML MML
pas00633 Trinitrotoluene degradation SBML MML
pas00640 Propanoate metabolism SBML MML
pas00641 3-Chloroacrylic acid degradation SBML MML
pas00650 Butanoate metabolism SBML MML
pas00660 C5-Branched dibasic acid metabolism SBML MML
pas00670 One carbon pool by folate SBML MML
pas00680 Methane metabolism SBML MML
pas00710 (Undocumented) SBML MML
pas00720 (Undocumented) SBML MML
pas00730 Thiamine metabolism SBML MML
pas00740 Riboflavin metabolism SBML MML
pas00750 Vitamin B6 metabolism SBML MML
pas00760 Nicotinate and nicotinamide metabolism SBML MML
pas00770 Pantothenate and CoA biosynthesis SBML MML
pas00785 Lipoic acid metabolism SBML MML
pas00790 Folate biosynthesis SBML MML
pas00860 Porphyrin and chlorophyll metabolism SBML MML
pas00900 Terpenoid backbone biosynthesis SBML MML
pas00903 (Undocumented) SBML MML
pas00910 Nitrogen metabolism SBML MML
pas00920 Sulfur metabolism SBML MML
pas00930 Caprolactam degradation SBML MML
pas00940 (Undocumented) SBML MML
pas00950 (Undocumented) SBML MML
pas00970 Aminoacyl-tRNA biosynthesis SBML MML
pas00982 (Undocumented) SBML MML
pas00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.