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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pat: Pseudoalteromonas atlantica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pat00010 Glycolysis / Gluconeogenesis SBML MML
pat00020 Citrate cycle (TCA cycle) SBML MML
pat00030 Pentose phosphate pathway SBML MML
pat00031 (Undocumented) SBML MML
pat00040 Pentose and glucuronate interconversions SBML MML
pat00051 Fructose and mannose metabolism SBML MML
pat00052 Galactose metabolism SBML MML
pat00053 Ascorbate and aldarate metabolism SBML MML
pat00061 Fatty acid biosynthesis SBML MML
pat00062 Fatty acid elongation in mitochondria SBML MML
pat00071 Fatty acid metabolism SBML MML
pat00072 Synthesis and degradation of ketone bodies SBML MML
pat00100 (Undocumented) SBML MML
pat00120 (Undocumented) SBML MML
pat00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pat00220 (Undocumented) SBML MML
pat00230 Purine metabolism SBML MML
pat00240 Pyrimidine metabolism SBML MML
pat00251 (Undocumented) SBML MML
pat00252 (Undocumented) SBML MML
pat00260 Glycine, serine and threonine metabolism SBML MML
pat00271 (Undocumented) SBML MML
pat00272 (Undocumented) SBML MML
pat00280 Valine, leucine and isoleucine degradation SBML MML
pat00281 Geraniol degradation SBML MML
pat00290 Valine, leucine and isoleucine biosynthesis SBML MML
pat00300 Lysine biosynthesis SBML MML
pat00310 Lysine degradation SBML MML
pat00311 Penicillin and cephalosporin biosynthesis SBML MML
pat00330 Arginine and proline metabolism SBML MML
pat00340 Histidine metabolism SBML MML
pat00350 Tyrosine metabolism SBML MML
pat00360 Phenylalanine metabolism SBML MML
pat00361 gamma-Hexachlorocyclohexane degradation SBML MML
pat00362 (Undocumented) SBML MML
pat00364 Fluorobenzoate degradation SBML MML
pat00380 Tryptophan metabolism SBML MML
pat00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pat00401 Novobiocin biosynthesis SBML MML
pat00410 beta-Alanine metabolism SBML MML
pat00430 Taurine and hypotaurine metabolism SBML MML
pat00450 Selenoamino acid metabolism SBML MML
pat00460 (Undocumented) SBML MML
pat00471 D-Glutamine and D-glutamate metabolism SBML MML
pat00472 D-Arginine and D-ornithine metabolism SBML MML
pat00473 D-Alanine metabolism SBML MML
pat00480 Glutathione metabolism SBML MML
pat00500 Starch and sucrose metabolism SBML MML
pat00520 Amino sugar and nucleotide sugar metabolism SBML MML
pat00521 Streptomycin biosynthesis SBML MML
pat00523 Polyketide sugar unit biosynthesis SBML MML
pat00530 (Undocumented) SBML MML
pat00540 Lipopolysaccharide biosynthesis SBML MML
pat00550 Peptidoglycan biosynthesis SBML MML
pat00561 Glycerolipid metabolism SBML MML
pat00562 Inositol phosphate metabolism SBML MML
pat00564 Glycerophospholipid metabolism SBML MML
pat00565 Ether lipid metabolism SBML MML
pat00590 Arachidonic acid metabolism SBML MML
pat00592 alpha-Linolenic acid metabolism SBML MML
pat00600 Sphingolipid metabolism SBML MML
pat00620 Pyruvate metabolism SBML MML
pat00622 Toluene and xylene degradation SBML MML
pat00623 2,4-Dichlorobenzoate degradation SBML MML
pat00624 1- and 2-Methylnaphthalene degradation SBML MML
pat00626 Naphthalene and anthracene degradation SBML MML
pat00627 1,4-Dichlorobenzene degradation SBML MML
pat00630 Glyoxylate and dicarboxylate metabolism SBML MML
pat00631 1,2-Dichloroethane degradation SBML MML
pat00632 (Undocumented) SBML MML
pat00640 Propanoate metabolism SBML MML
pat00641 3-Chloroacrylic acid degradation SBML MML
pat00643 Styrene degradation SBML MML
pat00650 Butanoate metabolism SBML MML
pat00660 C5-Branched dibasic acid metabolism SBML MML
pat00670 One carbon pool by folate SBML MML
pat00680 Methane metabolism SBML MML
pat00710 (Undocumented) SBML MML
pat00720 (Undocumented) SBML MML
pat00730 Thiamine metabolism SBML MML
pat00740 Riboflavin metabolism SBML MML
pat00750 Vitamin B6 metabolism SBML MML
pat00760 Nicotinate and nicotinamide metabolism SBML MML
pat00770 Pantothenate and CoA biosynthesis SBML MML
pat00780 Biotin metabolism SBML MML
pat00785 Lipoic acid metabolism SBML MML
pat00790 Folate biosynthesis SBML MML
pat00791 Atrazine degradation SBML MML
pat00860 Porphyrin and chlorophyll metabolism SBML MML
pat00900 Terpenoid backbone biosynthesis SBML MML
pat00903 (Undocumented) SBML MML
pat00910 Nitrogen metabolism SBML MML
pat00920 Sulfur metabolism SBML MML
pat00930 Caprolactam degradation SBML MML
pat00940 (Undocumented) SBML MML
pat00950 (Undocumented) SBML MML
pat00970 Aminoacyl-tRNA biosynthesis SBML MML
pat00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pat00982 (Undocumented) SBML MML
pat00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.