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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pau: Pseudomonas aeruginosa UCBPP-PA14

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pau00010 Glycolysis / Gluconeogenesis SBML MML
pau00020 Citrate cycle (TCA cycle) SBML MML
pau00030 Pentose phosphate pathway SBML MML
pau00031 (Undocumented) SBML MML
pau00040 Pentose and glucuronate interconversions SBML MML
pau00051 Fructose and mannose metabolism SBML MML
pau00052 Galactose metabolism SBML MML
pau00053 Ascorbate and aldarate metabolism SBML MML
pau00061 Fatty acid biosynthesis SBML MML
pau00062 Fatty acid elongation in mitochondria SBML MML
pau00071 Fatty acid metabolism SBML MML
pau00072 Synthesis and degradation of ketone bodies SBML MML
pau00100 (Undocumented) SBML MML
pau00120 (Undocumented) SBML MML
pau00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pau00220 (Undocumented) SBML MML
pau00230 Purine metabolism SBML MML
pau00240 Pyrimidine metabolism SBML MML
pau00251 (Undocumented) SBML MML
pau00252 (Undocumented) SBML MML
pau00260 Glycine, serine and threonine metabolism SBML MML
pau00271 (Undocumented) SBML MML
pau00272 (Undocumented) SBML MML
pau00280 Valine, leucine and isoleucine degradation SBML MML
pau00281 Geraniol degradation SBML MML
pau00290 Valine, leucine and isoleucine biosynthesis SBML MML
pau00300 Lysine biosynthesis SBML MML
pau00310 Lysine degradation SBML MML
pau00311 Penicillin and cephalosporin biosynthesis SBML MML
pau00330 Arginine and proline metabolism SBML MML
pau00340 Histidine metabolism SBML MML
pau00350 Tyrosine metabolism SBML MML
pau00360 Phenylalanine metabolism SBML MML
pau00361 gamma-Hexachlorocyclohexane degradation SBML MML
pau00362 (Undocumented) SBML MML
pau00364 Fluorobenzoate degradation SBML MML
pau00380 Tryptophan metabolism SBML MML
pau00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pau00401 Novobiocin biosynthesis SBML MML
pau00410 beta-Alanine metabolism SBML MML
pau00430 Taurine and hypotaurine metabolism SBML MML
pau00440 Phosphonate and phosphinate metabolism SBML MML
pau00450 Selenoamino acid metabolism SBML MML
pau00460 (Undocumented) SBML MML
pau00471 D-Glutamine and D-glutamate metabolism SBML MML
pau00473 D-Alanine metabolism SBML MML
pau00480 Glutathione metabolism SBML MML
pau00500 Starch and sucrose metabolism SBML MML
pau00520 Amino sugar and nucleotide sugar metabolism SBML MML
pau00521 Streptomycin biosynthesis SBML MML
pau00523 Polyketide sugar unit biosynthesis SBML MML
pau00530 (Undocumented) SBML MML
pau00540 Lipopolysaccharide biosynthesis SBML MML
pau00550 Peptidoglycan biosynthesis SBML MML
pau00561 Glycerolipid metabolism SBML MML
pau00562 Inositol phosphate metabolism SBML MML
pau00564 Glycerophospholipid metabolism SBML MML
pau00565 Ether lipid metabolism SBML MML
pau00590 Arachidonic acid metabolism SBML MML
pau00592 alpha-Linolenic acid metabolism SBML MML
pau00620 Pyruvate metabolism SBML MML
pau00622 Toluene and xylene degradation SBML MML
pau00623 2,4-Dichlorobenzoate degradation SBML MML
pau00624 1- and 2-Methylnaphthalene degradation SBML MML
pau00627 1,4-Dichlorobenzene degradation SBML MML
pau00629 Carbazole degradation SBML MML
pau00630 Glyoxylate and dicarboxylate metabolism SBML MML
pau00631 1,2-Dichloroethane degradation SBML MML
pau00632 (Undocumented) SBML MML
pau00633 Trinitrotoluene degradation SBML MML
pau00640 Propanoate metabolism SBML MML
pau00641 3-Chloroacrylic acid degradation SBML MML
pau00643 Styrene degradation SBML MML
pau00650 Butanoate metabolism SBML MML
pau00660 C5-Branched dibasic acid metabolism SBML MML
pau00670 One carbon pool by folate SBML MML
pau00680 Methane metabolism SBML MML
pau00710 (Undocumented) SBML MML
pau00720 (Undocumented) SBML MML
pau00730 Thiamine metabolism SBML MML
pau00740 Riboflavin metabolism SBML MML
pau00750 Vitamin B6 metabolism SBML MML
pau00760 Nicotinate and nicotinamide metabolism SBML MML
pau00770 Pantothenate and CoA biosynthesis SBML MML
pau00780 Biotin metabolism SBML MML
pau00785 Lipoic acid metabolism SBML MML
pau00790 Folate biosynthesis SBML MML
pau00791 Atrazine degradation SBML MML
pau00860 Porphyrin and chlorophyll metabolism SBML MML
pau00900 Terpenoid backbone biosynthesis SBML MML
pau00903 (Undocumented) SBML MML
pau00910 Nitrogen metabolism SBML MML
pau00920 Sulfur metabolism SBML MML
pau00930 Caprolactam degradation SBML MML
pau00941 (Undocumented) SBML MML
pau00950 (Undocumented) SBML MML
pau00960 (Undocumented) SBML MML
pau00970 Aminoacyl-tRNA biosynthesis SBML MML
pau00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pau00982 (Undocumented) SBML MML
pau00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.