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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pcl: Pyrobaculum calidifontis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pcl00010 Glycolysis / Gluconeogenesis SBML MML
pcl00020 Citrate cycle (TCA cycle) SBML MML
pcl00030 Pentose phosphate pathway SBML MML
pcl00031 (Undocumented) SBML MML
pcl00051 Fructose and mannose metabolism SBML MML
pcl00052 Galactose metabolism SBML MML
pcl00053 Ascorbate and aldarate metabolism SBML MML
pcl00061 Fatty acid biosynthesis SBML MML
pcl00062 Fatty acid elongation in mitochondria SBML MML
pcl00071 Fatty acid metabolism SBML MML
pcl00100 (Undocumented) SBML MML
pcl00120 (Undocumented) SBML MML
pcl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pcl00220 (Undocumented) SBML MML
pcl00230 Purine metabolism SBML MML
pcl00240 Pyrimidine metabolism SBML MML
pcl00251 (Undocumented) SBML MML
pcl00252 (Undocumented) SBML MML
pcl00260 Glycine, serine and threonine metabolism SBML MML
pcl00271 (Undocumented) SBML MML
pcl00272 (Undocumented) SBML MML
pcl00280 Valine, leucine and isoleucine degradation SBML MML
pcl00281 Geraniol degradation SBML MML
pcl00290 Valine, leucine and isoleucine biosynthesis SBML MML
pcl00300 Lysine biosynthesis SBML MML
pcl00310 Lysine degradation SBML MML
pcl00330 Arginine and proline metabolism SBML MML
pcl00340 Histidine metabolism SBML MML
pcl00350 Tyrosine metabolism SBML MML
pcl00360 Phenylalanine metabolism SBML MML
pcl00362 (Undocumented) SBML MML
pcl00380 Tryptophan metabolism SBML MML
pcl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pcl00401 Novobiocin biosynthesis SBML MML
pcl00410 beta-Alanine metabolism SBML MML
pcl00450 Selenoamino acid metabolism SBML MML
pcl00460 (Undocumented) SBML MML
pcl00480 Glutathione metabolism SBML MML
pcl00500 Starch and sucrose metabolism SBML MML
pcl00510 (Undocumented) SBML MML
pcl00520 Amino sugar and nucleotide sugar metabolism SBML MML
pcl00521 Streptomycin biosynthesis SBML MML
pcl00550 Peptidoglycan biosynthesis SBML MML
pcl00562 Inositol phosphate metabolism SBML MML
pcl00564 Glycerophospholipid metabolism SBML MML
pcl00592 alpha-Linolenic acid metabolism SBML MML
pcl00620 Pyruvate metabolism SBML MML
pcl00624 1- and 2-Methylnaphthalene degradation SBML MML
pcl00630 Glyoxylate and dicarboxylate metabolism SBML MML
pcl00632 (Undocumented) SBML MML
pcl00633 Trinitrotoluene degradation SBML MML
pcl00640 Propanoate metabolism SBML MML
pcl00641 3-Chloroacrylic acid degradation SBML MML
pcl00650 Butanoate metabolism SBML MML
pcl00660 C5-Branched dibasic acid metabolism SBML MML
pcl00670 One carbon pool by folate SBML MML
pcl00680 Methane metabolism SBML MML
pcl00710 (Undocumented) SBML MML
pcl00720 (Undocumented) SBML MML
pcl00730 Thiamine metabolism SBML MML
pcl00740 Riboflavin metabolism SBML MML
pcl00750 Vitamin B6 metabolism SBML MML
pcl00760 Nicotinate and nicotinamide metabolism SBML MML
pcl00770 Pantothenate and CoA biosynthesis SBML MML
pcl00785 Lipoic acid metabolism SBML MML
pcl00790 Folate biosynthesis SBML MML
pcl00860 Porphyrin and chlorophyll metabolism SBML MML
pcl00900 Terpenoid backbone biosynthesis SBML MML
pcl00903 (Undocumented) SBML MML
pcl00910 Nitrogen metabolism SBML MML
pcl00920 Sulfur metabolism SBML MML
pcl00930 Caprolactam degradation SBML MML
pcl00970 Aminoacyl-tRNA biosynthesis SBML MML
pcl00982 (Undocumented) SBML MML
pcl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.