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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pen: Pseudomonas entomophila

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pen00010 Glycolysis / Gluconeogenesis SBML MML
pen00020 Citrate cycle (TCA cycle) SBML MML
pen00030 Pentose phosphate pathway SBML MML
pen00031 (Undocumented) SBML MML
pen00040 Pentose and glucuronate interconversions SBML MML
pen00051 Fructose and mannose metabolism SBML MML
pen00052 Galactose metabolism SBML MML
pen00053 Ascorbate and aldarate metabolism SBML MML
pen00061 Fatty acid biosynthesis SBML MML
pen00062 Fatty acid elongation in mitochondria SBML MML
pen00071 Fatty acid metabolism SBML MML
pen00072 Synthesis and degradation of ketone bodies SBML MML
pen00100 (Undocumented) SBML MML
pen00120 (Undocumented) SBML MML
pen00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pen00220 (Undocumented) SBML MML
pen00230 Purine metabolism SBML MML
pen00240 Pyrimidine metabolism SBML MML
pen00251 (Undocumented) SBML MML
pen00252 (Undocumented) SBML MML
pen00260 Glycine, serine and threonine metabolism SBML MML
pen00271 (Undocumented) SBML MML
pen00272 (Undocumented) SBML MML
pen00280 Valine, leucine and isoleucine degradation SBML MML
pen00281 Geraniol degradation SBML MML
pen00290 Valine, leucine and isoleucine biosynthesis SBML MML
pen00300 Lysine biosynthesis SBML MML
pen00310 Lysine degradation SBML MML
pen00311 Penicillin and cephalosporin biosynthesis SBML MML
pen00330 Arginine and proline metabolism SBML MML
pen00340 Histidine metabolism SBML MML
pen00350 Tyrosine metabolism SBML MML
pen00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
pen00360 Phenylalanine metabolism SBML MML
pen00361 gamma-Hexachlorocyclohexane degradation SBML MML
pen00362 (Undocumented) SBML MML
pen00363 Bisphenol A degradation SBML MML
pen00364 Fluorobenzoate degradation SBML MML
pen00380 Tryptophan metabolism SBML MML
pen00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pen00401 Novobiocin biosynthesis SBML MML
pen00410 beta-Alanine metabolism SBML MML
pen00430 Taurine and hypotaurine metabolism SBML MML
pen00440 Phosphonate and phosphinate metabolism SBML MML
pen00450 Selenoamino acid metabolism SBML MML
pen00460 (Undocumented) SBML MML
pen00471 D-Glutamine and D-glutamate metabolism SBML MML
pen00473 D-Alanine metabolism SBML MML
pen00480 Glutathione metabolism SBML MML
pen00500 Starch and sucrose metabolism SBML MML
pen00520 Amino sugar and nucleotide sugar metabolism SBML MML
pen00521 Streptomycin biosynthesis SBML MML
pen00523 Polyketide sugar unit biosynthesis SBML MML
pen00530 (Undocumented) SBML MML
pen00540 Lipopolysaccharide biosynthesis SBML MML
pen00550 Peptidoglycan biosynthesis SBML MML
pen00561 Glycerolipid metabolism SBML MML
pen00562 Inositol phosphate metabolism SBML MML
pen00564 Glycerophospholipid metabolism SBML MML
pen00565 Ether lipid metabolism SBML MML
pen00590 Arachidonic acid metabolism SBML MML
pen00592 alpha-Linolenic acid metabolism SBML MML
pen00620 Pyruvate metabolism SBML MML
pen00622 Toluene and xylene degradation SBML MML
pen00623 2,4-Dichlorobenzoate degradation SBML MML
pen00624 1- and 2-Methylnaphthalene degradation SBML MML
pen00626 Naphthalene and anthracene degradation SBML MML
pen00627 1,4-Dichlorobenzene degradation SBML MML
pen00628 Fluorene degradation SBML MML
pen00629 Carbazole degradation SBML MML
pen00630 Glyoxylate and dicarboxylate metabolism SBML MML
pen00632 (Undocumented) SBML MML
pen00633 Trinitrotoluene degradation SBML MML
pen00640 Propanoate metabolism SBML MML
pen00641 3-Chloroacrylic acid degradation SBML MML
pen00642 Ethylbenzene degradation SBML MML
pen00643 Styrene degradation SBML MML
pen00650 Butanoate metabolism SBML MML
pen00660 C5-Branched dibasic acid metabolism SBML MML
pen00670 One carbon pool by folate SBML MML
pen00680 Methane metabolism SBML MML
pen00710 (Undocumented) SBML MML
pen00720 (Undocumented) SBML MML
pen00730 Thiamine metabolism SBML MML
pen00740 Riboflavin metabolism SBML MML
pen00750 Vitamin B6 metabolism SBML MML
pen00760 Nicotinate and nicotinamide metabolism SBML MML
pen00770 Pantothenate and CoA biosynthesis SBML MML
pen00780 Biotin metabolism SBML MML
pen00785 Lipoic acid metabolism SBML MML
pen00790 Folate biosynthesis SBML MML
pen00791 Atrazine degradation SBML MML
pen00860 Porphyrin and chlorophyll metabolism SBML MML
pen00900 Terpenoid backbone biosynthesis SBML MML
pen00903 (Undocumented) SBML MML
pen00906 Carotenoid biosynthesis SBML MML
pen00910 Nitrogen metabolism SBML MML
pen00920 Sulfur metabolism SBML MML
pen00930 Caprolactam degradation SBML MML
pen00940 (Undocumented) SBML MML
pen00950 (Undocumented) SBML MML
pen00960 (Undocumented) SBML MML
pen00970 Aminoacyl-tRNA biosynthesis SBML MML
pen00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pen00982 (Undocumented) SBML MML
pen00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.