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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pha: Pseudoalteromonas haloplanktis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pha00010 Glycolysis / Gluconeogenesis SBML MML
pha00020 Citrate cycle (TCA cycle) SBML MML
pha00030 Pentose phosphate pathway SBML MML
pha00031 (Undocumented) SBML MML
pha00040 Pentose and glucuronate interconversions SBML MML
pha00051 Fructose and mannose metabolism SBML MML
pha00052 Galactose metabolism SBML MML
pha00053 Ascorbate and aldarate metabolism SBML MML
pha00061 Fatty acid biosynthesis SBML MML
pha00062 Fatty acid elongation in mitochondria SBML MML
pha00071 Fatty acid metabolism SBML MML
pha00072 Synthesis and degradation of ketone bodies SBML MML
pha00100 (Undocumented) SBML MML
pha00120 (Undocumented) SBML MML
pha00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pha00140 (Undocumented) SBML MML
pha00150 Androgen and estrogen metabolism SBML MML
pha00220 (Undocumented) SBML MML
pha00230 Purine metabolism SBML MML
pha00240 Pyrimidine metabolism SBML MML
pha00251 (Undocumented) SBML MML
pha00252 (Undocumented) SBML MML
pha00260 Glycine, serine and threonine metabolism SBML MML
pha00271 (Undocumented) SBML MML
pha00272 (Undocumented) SBML MML
pha00280 Valine, leucine and isoleucine degradation SBML MML
pha00281 Geraniol degradation SBML MML
pha00290 Valine, leucine and isoleucine biosynthesis SBML MML
pha00300 Lysine biosynthesis SBML MML
pha00310 Lysine degradation SBML MML
pha00330 Arginine and proline metabolism SBML MML
pha00340 Histidine metabolism SBML MML
pha00350 Tyrosine metabolism SBML MML
pha00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
pha00360 Phenylalanine metabolism SBML MML
pha00361 gamma-Hexachlorocyclohexane degradation SBML MML
pha00362 (Undocumented) SBML MML
pha00363 Bisphenol A degradation SBML MML
pha00364 Fluorobenzoate degradation SBML MML
pha00380 Tryptophan metabolism SBML MML
pha00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pha00401 Novobiocin biosynthesis SBML MML
pha00410 beta-Alanine metabolism SBML MML
pha00430 Taurine and hypotaurine metabolism SBML MML
pha00450 Selenoamino acid metabolism SBML MML
pha00460 (Undocumented) SBML MML
pha00471 D-Glutamine and D-glutamate metabolism SBML MML
pha00473 D-Alanine metabolism SBML MML
pha00480 Glutathione metabolism SBML MML
pha00500 Starch and sucrose metabolism SBML MML
pha00520 Amino sugar and nucleotide sugar metabolism SBML MML
pha00521 Streptomycin biosynthesis SBML MML
pha00530 (Undocumented) SBML MML
pha00540 Lipopolysaccharide biosynthesis SBML MML
pha00550 Peptidoglycan biosynthesis SBML MML
pha00561 Glycerolipid metabolism SBML MML
pha00562 Inositol phosphate metabolism SBML MML
pha00564 Glycerophospholipid metabolism SBML MML
pha00590 Arachidonic acid metabolism SBML MML
pha00592 alpha-Linolenic acid metabolism SBML MML
pha00620 Pyruvate metabolism SBML MML
pha00621 (Undocumented) SBML MML
pha00622 Toluene and xylene degradation SBML MML
pha00624 1- and 2-Methylnaphthalene degradation SBML MML
pha00626 Naphthalene and anthracene degradation SBML MML
pha00627 1,4-Dichlorobenzene degradation SBML MML
pha00628 Fluorene degradation SBML MML
pha00630 Glyoxylate and dicarboxylate metabolism SBML MML
pha00631 1,2-Dichloroethane degradation SBML MML
pha00632 (Undocumented) SBML MML
pha00633 Trinitrotoluene degradation SBML MML
pha00640 Propanoate metabolism SBML MML
pha00641 3-Chloroacrylic acid degradation SBML MML
pha00642 Ethylbenzene degradation SBML MML
pha00643 Styrene degradation SBML MML
pha00650 Butanoate metabolism SBML MML
pha00660 C5-Branched dibasic acid metabolism SBML MML
pha00670 One carbon pool by folate SBML MML
pha00680 Methane metabolism SBML MML
pha00710 (Undocumented) SBML MML
pha00720 (Undocumented) SBML MML
pha00730 Thiamine metabolism SBML MML
pha00740 Riboflavin metabolism SBML MML
pha00750 Vitamin B6 metabolism SBML MML
pha00760 Nicotinate and nicotinamide metabolism SBML MML
pha00770 Pantothenate and CoA biosynthesis SBML MML
pha00780 Biotin metabolism SBML MML
pha00785 Lipoic acid metabolism SBML MML
pha00790 Folate biosynthesis SBML MML
pha00791 Atrazine degradation SBML MML
pha00860 Porphyrin and chlorophyll metabolism SBML MML
pha00900 Terpenoid backbone biosynthesis SBML MML
pha00903 (Undocumented) SBML MML
pha00910 Nitrogen metabolism SBML MML
pha00920 Sulfur metabolism SBML MML
pha00930 Caprolactam degradation SBML MML
pha00940 (Undocumented) SBML MML
pha00950 (Undocumented) SBML MML
pha00970 Aminoacyl-tRNA biosynthesis SBML MML
pha00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pha00982 (Undocumented) SBML MML
pha00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.