This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pin: Psychromonas ingrahamii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pin00010 Glycolysis / Gluconeogenesis SBML MML
pin00020 Citrate cycle (TCA cycle) SBML MML
pin00030 Pentose phosphate pathway SBML MML
pin00031 (Undocumented) SBML MML
pin00040 Pentose and glucuronate interconversions SBML MML
pin00051 Fructose and mannose metabolism SBML MML
pin00052 Galactose metabolism SBML MML
pin00053 Ascorbate and aldarate metabolism SBML MML
pin00061 Fatty acid biosynthesis SBML MML
pin00071 Fatty acid metabolism SBML MML
pin00100 (Undocumented) SBML MML
pin00120 (Undocumented) SBML MML
pin00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pin00220 (Undocumented) SBML MML
pin00230 Purine metabolism SBML MML
pin00240 Pyrimidine metabolism SBML MML
pin00251 (Undocumented) SBML MML
pin00252 (Undocumented) SBML MML
pin00260 Glycine, serine and threonine metabolism SBML MML
pin00271 (Undocumented) SBML MML
pin00272 (Undocumented) SBML MML
pin00280 Valine, leucine and isoleucine degradation SBML MML
pin00281 Geraniol degradation SBML MML
pin00290 Valine, leucine and isoleucine biosynthesis SBML MML
pin00300 Lysine biosynthesis SBML MML
pin00310 Lysine degradation SBML MML
pin00330 Arginine and proline metabolism SBML MML
pin00340 Histidine metabolism SBML MML
pin00350 Tyrosine metabolism SBML MML
pin00360 Phenylalanine metabolism SBML MML
pin00361 gamma-Hexachlorocyclohexane degradation SBML MML
pin00362 (Undocumented) SBML MML
pin00363 Bisphenol A degradation SBML MML
pin00380 Tryptophan metabolism SBML MML
pin00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pin00401 Novobiocin biosynthesis SBML MML
pin00410 beta-Alanine metabolism SBML MML
pin00430 Taurine and hypotaurine metabolism SBML MML
pin00440 Phosphonate and phosphinate metabolism SBML MML
pin00450 Selenoamino acid metabolism SBML MML
pin00460 (Undocumented) SBML MML
pin00471 D-Glutamine and D-glutamate metabolism SBML MML
pin00473 D-Alanine metabolism SBML MML
pin00480 Glutathione metabolism SBML MML
pin00500 Starch and sucrose metabolism SBML MML
pin00520 Amino sugar and nucleotide sugar metabolism SBML MML
pin00521 Streptomycin biosynthesis SBML MML
pin00523 Polyketide sugar unit biosynthesis SBML MML
pin00530 (Undocumented) SBML MML
pin00540 Lipopolysaccharide biosynthesis SBML MML
pin00550 Peptidoglycan biosynthesis SBML MML
pin00561 Glycerolipid metabolism SBML MML
pin00562 Inositol phosphate metabolism SBML MML
pin00564 Glycerophospholipid metabolism SBML MML
pin00592 alpha-Linolenic acid metabolism SBML MML
pin00600 Sphingolipid metabolism SBML MML
pin00620 Pyruvate metabolism SBML MML
pin00624 1- and 2-Methylnaphthalene degradation SBML MML
pin00626 Naphthalene and anthracene degradation SBML MML
pin00630 Glyoxylate and dicarboxylate metabolism SBML MML
pin00631 1,2-Dichloroethane degradation SBML MML
pin00632 (Undocumented) SBML MML
pin00633 Trinitrotoluene degradation SBML MML
pin00640 Propanoate metabolism SBML MML
pin00641 3-Chloroacrylic acid degradation SBML MML
pin00650 Butanoate metabolism SBML MML
pin00660 C5-Branched dibasic acid metabolism SBML MML
pin00670 One carbon pool by folate SBML MML
pin00680 Methane metabolism SBML MML
pin00710 (Undocumented) SBML MML
pin00720 (Undocumented) SBML MML
pin00730 Thiamine metabolism SBML MML
pin00740 Riboflavin metabolism SBML MML
pin00750 Vitamin B6 metabolism SBML MML
pin00760 Nicotinate and nicotinamide metabolism SBML MML
pin00770 Pantothenate and CoA biosynthesis SBML MML
pin00780 Biotin metabolism SBML MML
pin00785 Lipoic acid metabolism SBML MML
pin00790 Folate biosynthesis SBML MML
pin00791 Atrazine degradation SBML MML
pin00860 Porphyrin and chlorophyll metabolism SBML MML
pin00900 Terpenoid backbone biosynthesis SBML MML
pin00903 (Undocumented) SBML MML
pin00910 Nitrogen metabolism SBML MML
pin00920 Sulfur metabolism SBML MML
pin00940 (Undocumented) SBML MML
pin00941 (Undocumented) SBML MML
pin00950 (Undocumented) SBML MML
pin00970 Aminoacyl-tRNA biosynthesis SBML MML
pin00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
pin00982 (Undocumented) SBML MML
pin00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.