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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism pis: Pyrobaculum islandicum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
pis00010 Glycolysis / Gluconeogenesis SBML MML
pis00020 Citrate cycle (TCA cycle) SBML MML
pis00030 Pentose phosphate pathway SBML MML
pis00031 (Undocumented) SBML MML
pis00040 Pentose and glucuronate interconversions SBML MML
pis00051 Fructose and mannose metabolism SBML MML
pis00052 Galactose metabolism SBML MML
pis00061 Fatty acid biosynthesis SBML MML
pis00062 Fatty acid elongation in mitochondria SBML MML
pis00071 Fatty acid metabolism SBML MML
pis00100 (Undocumented) SBML MML
pis00120 (Undocumented) SBML MML
pis00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
pis00220 (Undocumented) SBML MML
pis00230 Purine metabolism SBML MML
pis00240 Pyrimidine metabolism SBML MML
pis00251 (Undocumented) SBML MML
pis00252 (Undocumented) SBML MML
pis00260 Glycine, serine and threonine metabolism SBML MML
pis00271 (Undocumented) SBML MML
pis00272 (Undocumented) SBML MML
pis00280 Valine, leucine and isoleucine degradation SBML MML
pis00281 Geraniol degradation SBML MML
pis00290 Valine, leucine and isoleucine biosynthesis SBML MML
pis00300 Lysine biosynthesis SBML MML
pis00310 Lysine degradation SBML MML
pis00330 Arginine and proline metabolism SBML MML
pis00340 Histidine metabolism SBML MML
pis00350 Tyrosine metabolism SBML MML
pis00360 Phenylalanine metabolism SBML MML
pis00380 Tryptophan metabolism SBML MML
pis00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
pis00401 Novobiocin biosynthesis SBML MML
pis00410 beta-Alanine metabolism SBML MML
pis00450 Selenoamino acid metabolism SBML MML
pis00460 (Undocumented) SBML MML
pis00480 Glutathione metabolism SBML MML
pis00500 Starch and sucrose metabolism SBML MML
pis00510 (Undocumented) SBML MML
pis00520 Amino sugar and nucleotide sugar metabolism SBML MML
pis00521 Streptomycin biosynthesis SBML MML
pis00550 Peptidoglycan biosynthesis SBML MML
pis00562 Inositol phosphate metabolism SBML MML
pis00564 Glycerophospholipid metabolism SBML MML
pis00592 alpha-Linolenic acid metabolism SBML MML
pis00620 Pyruvate metabolism SBML MML
pis00624 1- and 2-Methylnaphthalene degradation SBML MML
pis00630 Glyoxylate and dicarboxylate metabolism SBML MML
pis00632 (Undocumented) SBML MML
pis00633 Trinitrotoluene degradation SBML MML
pis00640 Propanoate metabolism SBML MML
pis00641 3-Chloroacrylic acid degradation SBML MML
pis00650 Butanoate metabolism SBML MML
pis00660 C5-Branched dibasic acid metabolism SBML MML
pis00670 One carbon pool by folate SBML MML
pis00680 Methane metabolism SBML MML
pis00710 (Undocumented) SBML MML
pis00720 (Undocumented) SBML MML
pis00730 Thiamine metabolism SBML MML
pis00740 Riboflavin metabolism SBML MML
pis00750 Vitamin B6 metabolism SBML MML
pis00760 Nicotinate and nicotinamide metabolism SBML MML
pis00770 Pantothenate and CoA biosynthesis SBML MML
pis00790 Folate biosynthesis SBML MML
pis00860 Porphyrin and chlorophyll metabolism SBML MML
pis00900 Terpenoid backbone biosynthesis SBML MML
pis00903 (Undocumented) SBML MML
pis00910 Nitrogen metabolism SBML MML
pis00920 Sulfur metabolism SBML MML
pis00930 Caprolactam degradation SBML MML
pis00940 (Undocumented) SBML MML
pis00970 Aminoacyl-tRNA biosynthesis SBML MML
pis00982 (Undocumented) SBML MML
pis00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.