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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism plt: Pelodictyon luteolum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
plt00010 Glycolysis / Gluconeogenesis SBML MML
plt00020 Citrate cycle (TCA cycle) SBML MML
plt00030 Pentose phosphate pathway SBML MML
plt00040 Pentose and glucuronate interconversions SBML MML
plt00051 Fructose and mannose metabolism SBML MML
plt00052 Galactose metabolism SBML MML
plt00061 Fatty acid biosynthesis SBML MML
plt00100 (Undocumented) SBML MML
plt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
plt00220 (Undocumented) SBML MML
plt00230 Purine metabolism SBML MML
plt00240 Pyrimidine metabolism SBML MML
plt00251 (Undocumented) SBML MML
plt00252 (Undocumented) SBML MML
plt00260 Glycine, serine and threonine metabolism SBML MML
plt00271 (Undocumented) SBML MML
plt00272 (Undocumented) SBML MML
plt00280 Valine, leucine and isoleucine degradation SBML MML
plt00290 Valine, leucine and isoleucine biosynthesis SBML MML
plt00300 Lysine biosynthesis SBML MML
plt00330 Arginine and proline metabolism SBML MML
plt00340 Histidine metabolism SBML MML
plt00350 Tyrosine metabolism SBML MML
plt00360 Phenylalanine metabolism SBML MML
plt00380 Tryptophan metabolism SBML MML
plt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
plt00401 Novobiocin biosynthesis SBML MML
plt00410 beta-Alanine metabolism SBML MML
plt00430 Taurine and hypotaurine metabolism SBML MML
plt00450 Selenoamino acid metabolism SBML MML
plt00471 D-Glutamine and D-glutamate metabolism SBML MML
plt00473 D-Alanine metabolism SBML MML
plt00480 Glutathione metabolism SBML MML
plt00500 Starch and sucrose metabolism SBML MML
plt00520 Amino sugar and nucleotide sugar metabolism SBML MML
plt00521 Streptomycin biosynthesis SBML MML
plt00523 Polyketide sugar unit biosynthesis SBML MML
plt00530 (Undocumented) SBML MML
plt00540 Lipopolysaccharide biosynthesis SBML MML
plt00550 Peptidoglycan biosynthesis SBML MML
plt00561 Glycerolipid metabolism SBML MML
plt00562 Inositol phosphate metabolism SBML MML
plt00564 Glycerophospholipid metabolism SBML MML
plt00620 Pyruvate metabolism SBML MML
plt00630 Glyoxylate and dicarboxylate metabolism SBML MML
plt00640 Propanoate metabolism SBML MML
plt00650 Butanoate metabolism SBML MML
plt00660 C5-Branched dibasic acid metabolism SBML MML
plt00670 One carbon pool by folate SBML MML
plt00680 Methane metabolism SBML MML
plt00710 (Undocumented) SBML MML
plt00720 (Undocumented) SBML MML
plt00730 Thiamine metabolism SBML MML
plt00740 Riboflavin metabolism SBML MML
plt00750 Vitamin B6 metabolism SBML MML
plt00760 Nicotinate and nicotinamide metabolism SBML MML
plt00770 Pantothenate and CoA biosynthesis SBML MML
plt00780 Biotin metabolism SBML MML
plt00785 Lipoic acid metabolism SBML MML
plt00790 Folate biosynthesis SBML MML
plt00860 Porphyrin and chlorophyll metabolism SBML MML
plt00900 Terpenoid backbone biosynthesis SBML MML
plt00906 Carotenoid biosynthesis SBML MML
plt00910 Nitrogen metabolism SBML MML
plt00920 Sulfur metabolism SBML MML
plt00941 (Undocumented) SBML MML
plt00970 Aminoacyl-tRNA biosynthesis SBML MML
plt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.